RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP40-210ENST00000454354 ABHD8Q96I13 439 aa14.87□□□□□ -0.03
USP40-210ENST00000454354 C1orf115Q9H7X2 142 aa14.87□□□□□ -0.03
USP40-210ENST00000454354 NOP58Q9Y2X3 529 aaKnown RBP14.87□□□□□ -0.03
USP40-210ENST00000454354 MANSC4A6NHS7 340 aaPredicted RBP14.86□□□□□ -0.03
USP40-210ENST00000454354 MS4A1P11836 297 aa14.86□□□□□ -0.03
USP40-210ENST00000454354 INHBEP58166 350 aa14.86□□□□□ -0.03
USP40-210ENST00000454354 CDC42EP5Q6NZY7 148 aa14.86□□□□□ -0.03
USP40-210ENST00000454354 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.86□□□□□ -0.03
USP40-210ENST00000454354 HOOK2Q96ED9 719 aa14.86□□□□□ -0.03
USP40-210ENST00000454354 NEUROD6Q96NK8 337 aa14.86□□□□□ -0.03
USP40-210ENST00000454354 GJA5P36382 358 aa14.85□□□□□ -0.03
USP40-210ENST00000454354 SPTY2D1Q68D10 685 aaPredicted RBP14.85□□□□□ -0.03
USP40-210ENST00000454354 PANK1Q8TE04 598 aa14.85□□□□□ -0.03
USP40-210ENST00000454354 FAM151AQ8WW52 585 aa14.85□□□□□ -0.03
USP40-210ENST00000454354 FAM163AQ96GL9 167 aaPredicted RBP14.85□□□□□ -0.03
USP40-210ENST00000454354 MCOLN1Q9GZU1 580 aa14.85□□□□□ -0.03
USP40-210ENST00000454354 HMG20BQ9P0W2 317 aa14.85□□□□□ -0.03
USP40-210ENST00000454354 DOCK1Q14185 1865 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 PTPRFP10586 1907 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 ALDH1A1P00352 501 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 TNNI3KQ59H18 835 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 CEP85Q6P2H3 762 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 DZIP1Q86YF9 867 aaKnown RBP14.84□□□□□ -0.03
USP40-210ENST00000454354 SLF2Q8IX21 1173 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 SPATA5Q8NB90 893 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 ELP3Q9H9T3 547 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 ABCF2Q9UG63 623 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 FPGT-TNNI3KV9GXZ4 949 aa14.84□□□□□ -0.03
USP40-210ENST00000454354 PHIPQ8WWQ0 1821 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 ATAD5Q96QE3 1844 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 TESPA1A2RU30 521 aaPredicted RBP14.83□□□□□ -0.04
USP40-210ENST00000454354 SURF6O75683 361 aaKnown RBP14.83□□□□□ -0.04
USP40-210ENST00000454354 UQCRFS1P1P0C7P4 283 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 MCAMP43121 646 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 MAP3K9P80192 1104 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 NFIAQ12857 509 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 DGKZQ13574 1117 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 VGLL4Q14135 290 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 GORABQ5T7V8 394 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 DCAF15Q66K64 600 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 PI16Q6UXB8 463 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 IFNL1Q8IU54 200 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 OPTNQ96CV9 577 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 IDI2Q9BXS1 227 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 USP40Q9NVE5 1235 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 FAM198AQ9UFP1 575 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 MROH7-TTC4A0A0A0MT08 1334 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 ATRNL1Q5VV63 1379 aa14.83□□□□□ -0.04
USP40-210ENST00000454354 IGF2BP3O00425 579 aaKnown RBP eCLIP14.82□□□□□ -0.04
USP40-210ENST00000454354 TBC1D8O95759 1140 aa14.82□□□□□ -0.04
USP40-210ENST00000454354 OS9Q13438 667 aaPredicted RBP14.82□□□□□ -0.04
USP40-210ENST00000454354 ERICH6Q7L0X2 663 aa14.82□□□□□ -0.04
USP40-210ENST00000454354 ZNF384Q8TF68 577 aa14.82□□□□□ -0.04
USP40-210ENST00000454354 RCAN3Q9UKA8 241 aa14.82□□□□□ -0.04
USP40-210ENST00000454354 CSADQ9Y600 493 aa14.82□□□□□ -0.04
USP40-210ENST00000454354 SNCAIPQ9Y6H5 919 aa14.82□□□□□ -0.04
USP40-210ENST00000454354 SIPA1L1O43166 1804 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 SPDYE5A6NIY4 337 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 GPR25O00155 361 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 ENTPD3O75355 529 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 MECOMQ03112 1051 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 CTU1Q7Z7A3 348 aaKnown RBP14.81□□□□□ -0.04
USP40-210ENST00000454354 ZNF296Q8WUU4 475 aaPredicted RBP14.81□□□□□ -0.04
USP40-210ENST00000454354 NSUN4Q96CB9 384 aaKnown RBP14.81□□□□□ -0.04
USP40-210ENST00000454354 MS4A4AQ96JQ5 239 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 ZNF512BQ96KM6 892 aaPredicted RBP14.81□□□□□ -0.04
USP40-210ENST00000454354 WRNIP1Q96S55 665 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 DBNDD2Q9BQY9 259 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 ZNF341Q9BYN7 854 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 DDX19BQ9UMR2 479 aa14.81□□□□□ -0.04
USP40-210ENST00000454354 COL2A1P02458 1487 aaPredicted RBP14.81□□□□□ -0.04
USP40-210ENST00000454354 GPR75-ASB3A0A0A6YYF3 556 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 BTDP43251 543 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 RGS3P49796 1198 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 TCP10Q12799 353 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 CNKSR2Q8WXI2 1034 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 R3HDMLQ9H3Y0 253 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.8□□□□□ -0.04
USP40-210ENST00000454354 ZNF112Q9UJU3 913 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 HTTP42858 3142 aa14.8□□□□□ -0.04
USP40-210ENST00000454354 IGSF3O75054 1194 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 NPM3O75607 178 aaKnown RBP14.79□□□□□ -0.04
USP40-210ENST00000454354 WDHD1O75717 1129 aaPredicted RBP14.79□□□□□ -0.04
USP40-210ENST00000454354 MAP4K4O95819 1239 aaPredicted RBP14.79□□□□□ -0.04
USP40-210ENST00000454354 GTF2A2P52657 109 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 RHBDL3P58872 404 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 GSTO1P78417 241 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 CCDC158Q5M9N0 1113 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 TTC39AQ5SRH9 613 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 OTUD7BQ6GQQ9 843 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 TBC1D9Q6ZT07 1266 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 ERO1BQ86YB8 467 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 ZFPM1Q8IX07 1006 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 ZKSCAN4Q969J2 545 aaPredicted RBP14.79□□□□□ -0.04
USP40-210ENST00000454354 PTPN18Q99952 460 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 ZBTB40Q9NUA8 1239 aa14.79□□□□□ -0.04
USP40-210ENST00000454354 DBNLQ9UJU6 430 aaKnown RBP14.79□□□□□ -0.04
USP40-210ENST00000454354 MYH1P12882 1939 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 LDHCP07864 332 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms