RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 FOXP2O15409 715 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 USP17L8P0C7I0 530 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 GMPSP49915 693 aaPredicted RBP17.5■□□□□ 0.39
TNF-208ENST00000449264 HHIPL2Q6UWX4 724 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 SH3RF3Q8TEJ3 882 aaPredicted RBP17.5■□□□□ 0.39
TNF-208ENST00000449264 SDR42E1Q8WUS8 393 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 FAM163AQ96GL9 167 aaPredicted RBP17.5■□□□□ 0.39
TNF-208ENST00000449264 DSCC1Q9BVC3 393 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 CRNKL1Q9BZJ0 848 aaKnown RBP17.5■□□□□ 0.39
TNF-208ENST00000449264 TSHZ2Q9NRE2 1034 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 SERPINA10Q9UK55 444 aa17.5■□□□□ 0.39
TNF-208ENST00000449264 SHTN1A0MZ66 631 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 GNAT2P19087 354 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 MCCP23508 829 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 RPS12P25398 132 aaKnown RBP17.49■□□□□ 0.39
TNF-208ENST00000449264 CFAP100Q494V2 611 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 MAP4K1Q92918 833 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 FOCADQ5VW36 1801 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 LAMA4Q16363 1823 aa17.49■□□□□ 0.39
TNF-208ENST00000449264 HDLBPQ00341 1268 aaKnown RBP17.48■□□□□ 0.39
TNF-208ENST00000449264 TEX11Q8IYF3 940 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 GPC2Q8N158 579 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 ZDHHC15Q96MV8 337 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 TBC1D32Q96NH3 1257 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 EPB41L4AQ9HCS5 686 aaPredicted RBP17.48■□□□□ 0.39
TNF-208ENST00000449264 PLCG2P16885 1265 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 TDO2P48775 406 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 PPP4CP60510 307 aa17.48■□□□□ 0.39
TNF-208ENST00000449264 U3KPZ7 1027 aaPredicted RBP17.48■□□□□ 0.39
TNF-208ENST00000449264 GSG1L2A8MUP6 293 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 PATL2C9JE40 543 aaKnown RBP17.47■□□□□ 0.39
TNF-208ENST00000449264 EPB41L2O43491 1005 aaKnown RBP17.47■□□□□ 0.39
TNF-208ENST00000449264 USP5P45974 858 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 APOBEC3HQ6NTF7 200 aaKnown RBP17.47■□□□□ 0.39
TNF-208ENST00000449264 CERS3Q8IU89 383 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 MICALL2Q8IY33 904 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 MRIQ9BWK5 157 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 NACAP1Q9BZK3 213 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 NAPBQ9H115 298 aa17.47■□□□□ 0.39
TNF-208ENST00000449264 LAMB1P07942 1786 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 DCAF8L1A6NGE4 600 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 DDNO94850 711 aaPredicted RBP17.46■□□□□ 0.39
TNF-208ENST00000449264 HSPA4P34932 840 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 RHBDL3P58872 404 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 DLGAP5Q15398 846 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 IFNL3Q8IZI9 196 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 USP40Q9NVE5 1235 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 PALD1Q9ULE6 856 aa17.46■□□□□ 0.39
TNF-208ENST00000449264 MYH1P12882 1939 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 FGAP02671 866 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 RBM25P49756 843 aaKnown RBP17.45■□□□□ 0.38
TNF-208ENST00000449264 CREB3L3Q68CJ9 461 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 CDC42EP5Q6NZY7 148 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 TGFBRAP1Q8WUH2 860 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 DPF2Q92785 391 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 MYOZ2Q9NPC6 264 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 CNOT7Q9UIV1 285 aaKnown RBP17.45■□□□□ 0.38
TNF-208ENST00000449264 DDX60LQ5H9U9 1706 aaKnown RBP17.45■□□□□ 0.38
TNF-208ENST00000449264 SPDYE2BA6NHP3 402 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 SPDYE6P0CI01 402 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 HAND2P61296 217 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 PICALMQ13492 652 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 NECTIN1Q15223 517 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 RBM26Q5T8P6 1007 aaKnown RBP17.45■□□□□ 0.38
TNF-208ENST00000449264 MAPKAPK5Q8IW41 473 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 DDRGK1Q96HY6 314 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 PRMT6Q96LA8 375 aaPredicted RBP17.45■□□□□ 0.38
TNF-208ENST00000449264 CTNNA3Q9UI47 895 aa17.45■□□□□ 0.38
TNF-208ENST00000449264 RPAP1Q9BWH6 1393 aaPredicted RBP17.44■□□□□ 0.38
TNF-208ENST00000449264 SLC27A2O14975 620 aa17.44■□□□□ 0.38
TNF-208ENST00000449264 CACNB3P54284 484 aa17.44■□□□□ 0.38
TNF-208ENST00000449264 RNF20Q5VTR2 975 aa17.44■□□□□ 0.38
TNF-208ENST00000449264 TDRD3Q9H7E2 651 aaKnown RBP17.44■□□□□ 0.38
TNF-208ENST00000449264 DCP1AQ9NPI6 582 aaPredicted RBP17.44■□□□□ 0.38
TNF-208ENST00000449264 ATP8A2Q9NTI2 1148 aa17.44■□□□□ 0.38
TNF-208ENST00000449264 ZMYM6O95789 1325 aa17.43■□□□□ 0.38
TNF-208ENST00000449264 FLT1P17948 1338 aa17.43■□□□□ 0.38
TNF-208ENST00000449264 ZC3H4Q9UPT8 1303 aaKnown RBP17.43■□□□□ 0.38
TNF-208ENST00000449264 ZNF280AP59817 542 aaPredicted RBP17.43■□□□□ 0.38
TNF-208ENST00000449264 IMMTQ16891 758 aaKnown RBP17.43■□□□□ 0.38
TNF-208ENST00000449264 SLC4A8Q2Y0W8 1093 aa17.43■□□□□ 0.38
TNF-208ENST00000449264 SAMD7Q7Z3H4 446 aa17.43■□□□□ 0.38
TNF-208ENST00000449264 RASEFQ8IZ41 740 aa17.43■□□□□ 0.38
TNF-208ENST00000449264 GPRC5DQ9NZD1 345 aa17.43■□□□□ 0.38
TNF-208ENST00000449264 CLRN2A0PK11 232 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 H7C1D1 291 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 EGFRP00533 1210 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 CYP21A2P08686 494 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 ZKSCAN1P17029 563 aaPredicted RBP17.42■□□□□ 0.38
TNF-208ENST00000449264 ALX1Q15699 326 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 TBC1D10BQ4KMP7 808 aaPredicted RBP17.42■□□□□ 0.38
TNF-208ENST00000449264 DPY19L2Q6NUT2 758 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 MCM9Q9NXL9 1143 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 SAP30BPQ9UHR5 308 aaKnown RBP17.42■□□□□ 0.38
TNF-208ENST00000449264 SNX14Q9Y5W7 946 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 TAF6LQ9Y6J9 622 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 MINDY4BA8MYZ0 360 aa17.42■□□□□ 0.38
TNF-208ENST00000449264 WDHD1O75717 1129 aaPredicted RBP17.42■□□□□ 0.38
TNF-208ENST00000449264 LMOD1P29536 600 aaPredicted RBP17.42■□□□□ 0.38
TNF-208ENST00000449264 NFIAQ12857 509 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms