RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 SNX21Q969T3 373 aa9.64□□□□□ -0.87
PTPN3-204ENST00000446349 RAB3GAP1Q15042 981 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 NEK11Q8NG66 645 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 CARD10Q9BWT7 1032 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 TRIM14Q14142 442 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 KRT25Q7Z3Z0 450 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 DCPSQ96C86 337 aaKnown RBP9.63□□□□□ -0.87
PTPN3-204ENST00000446349 TACC1O75410 805 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 ZSCAN30Q86W11 494 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 TRIM6Q9C030 488 aaPredicted RBP9.63□□□□□ -0.87
PTPN3-204ENST00000446349 ZNF354CQ86Y25 554 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 FAM135BQ49AJ0 1406 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 PPIP5K2O43314 1243 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 MCF2L2Q86YR7 1114 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.63□□□□□ -0.87
PTPN3-204ENST00000446349 SPTLC2O15270 562 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 CCNA1P78396 465 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 PAXBP1Q9Y5B6 917 aa9.63□□□□□ -0.87
PTPN3-204ENST00000446349 CCDC175P0C221 793 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 GCKRQ14397 625 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 CEP85Q6P2H3 762 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 RGS22Q8NE09 1264 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 IQCGQ9H095 443 aaKnown RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 KDM6BO15054 1643 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 A0A1B0GUL7 405 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 GALNT17Q6IS24 598 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 SULF1Q8IWU6 871 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 C8orf58Q8NAV2 365 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 SLC17A8Q8NDX2 589 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 PTPRKQ15262 1439 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 KRT86O43790 486 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 RFX1P22670 979 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 PRIM1P49642 420 aaKnown RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 UBASH3AP57075 661 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 TFCP2Q12800 502 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 SMCR8Q8TEV9 937 aaPredicted RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 CNGA1P29973 690 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 HOXA7P31268 230 aaPredicted RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 HLTFQ14527 1009 aaKnown RBP eCLIP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 KDM3AQ9Y4C1 1321 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 VIMP08670 466 aaKnown RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 NMIQ13287 307 aaPredicted RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 RUFY3Q7L099 469 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 PPP1R14CQ8TAE6 165 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 SRRTQ9BXP5 876 aaKnown RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 MTUS1Q9ULD2 1270 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 TET3O43151 1660 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 STK10O94804 968 aaKnown RBP9.62□□□□□ -0.87
PTPN3-204ENST00000446349 SLC1A4P43007 532 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 KIF11P52732 1056 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 KRT26Q7Z3Y9 468 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 TBC1D32Q96NH3 1257 aa9.62□□□□□ -0.87
PTPN3-204ENST00000446349 SUPT20HL1Q3ZLR7 823 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 VSIG10Q8N0Z9 540 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 MAK16Q9BXY0 300 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 RNF216Q9NWF9 866 aaPredicted RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 LEMD3Q9Y2U8 911 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 CD2APQ9Y5K6 639 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 ARAP3Q8WWN8 1544 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 RPS8P62241 208 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 MIS12Q9H081 205 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 TXNDC16Q9P2K2 825 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 CGNQ9P2M7 1197 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 ANGEL1Q9UNK9 670 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 CREB3L3Q68CJ9 461 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 TTC14Q96N46 770 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 MRVI1Q9Y6F6 885 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 SETD1BQ9UPS6 1966 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 PRPF4BQ13523 1007 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 ELMSAN1Q6PJG2 1045 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 MBD4O95243 580 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 CEP112Q8N8E3 955 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 RABGAP1Q9Y3P9 1069 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 NOC2LQ9Y3T9 749 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 ARHGEF37A1IGU5 675 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 ANXA1P04083 346 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 KIF5AQ12840 1032 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 TNNI3KQ59H18 835 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 TICAM2Q86XR7 235 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 NSRP1Q9H0G5 558 aaKnown RBP9.61□□□□□ -0.87
PTPN3-204ENST00000446349 CCDC113Q9H0I3 377 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 FPGT-TNNI3KV9GXZ4 949 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 ELP1O95163 1332 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 IL13P35225 146 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 RAB3IL1Q8TBN0 382 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 NT5C3AQ9H0P0 336 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 SWAP70Q9UH65 585 aa9.61□□□□□ -0.87
PTPN3-204ENST00000446349 CDC42BPGQ6DT37 1551 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 WDR17Q8IZU2 1322 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 ARHGEF35A5YM69 484 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 TMX3Q96JJ7 454 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 JPH2Q9BR39 696 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-204ENST00000446349 URI1O94763 535 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-204ENST00000446349 TRPC3Q13507 836 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 KLHL40Q2TBA0 621 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 TMC6Q7Z403 805 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 MYOM2P54296 1465 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 KMT5BQ4FZB7 885 aa9.6□□□□□ -0.87
PTPN3-204ENST00000446349 SYNMO15061 1565 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms