RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 TRIM4Q9C037 500 aa3.19□□□□□ -1.9
LIG4-203ENST00000442234 KIF9Q9HAQ2 790 aa3.19□□□□□ -1.9
LIG4-203ENST00000442234 PICK1Q9NRD5 415 aa3.19□□□□□ -1.9
LIG4-203ENST00000442234 ADAM21Q9UKJ8 722 aa3.19□□□□□ -1.9
LIG4-203ENST00000442234 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.19□□□□□ -1.9
LIG4-203ENST00000442234 CPS1P31327 1500 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 MLH3Q9UHC1 1453 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SHTN1A0MZ66 631 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 GPR37O15354 613 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 OATP04181 439 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 TPP2P29144 1249 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 CRYMQ14894 314 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 C11orf91Q3C1V1 193 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 LRRC23Q53EV4 343 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 RRP12Q5JTH9 1297 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 POTEEQ6S8J3 1075 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 KIAA0825Q8IV33 1275 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CCAR1Q8IX12 1150 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 EXOC8Q8IYI6 725 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 RNF168Q8IYW5 571 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 GPT2Q8TD30 523 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SPDL1Q96EA4 605 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CCDC114Q96M63 670 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PLEKHA4Q9H4M7 779 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 NSFL1CQ9UNZ2 370 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 CAPN7Q9Y6W3 813 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PIEZO1Q92508 2521 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 EFCAB6Q5THR3 1501 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PTPRUQ92729 1446 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 ARHGEF10O15013 1369 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 NPC1L1Q9UHC9 1359 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PLEKHG1Q9ULL1 1385 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 ANKRD18BA2A2Z9 1011 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CHUKO15111 745 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PPIP5K2O43314 1243 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PHACTR2O75167 634 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 COQ9O75208 318 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SKAP2O75563 359 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 HNRNPH1P31943 449 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 EIF6P56537 245 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 C1QTNF12Q5T7M4 302 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 FBXW10Q5XX13 1052 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SPTY2D1Q68D10 685 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 MICALCLQ6ZW33 695 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PODNQ7Z5L7 613 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 TRIM42Q8IWZ5 723 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SMC1BQ8NDV3 1235 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 MIPOL1Q8TD10 442 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 MICAL1Q8TDZ2 1067 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 PARD3BQ8TEW8 1205 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 RPGRQ92834 1020 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 BORCS6Q96GS4 357 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 ABHD8Q96I13 439 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 THUMPD2Q9BTF0 503 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 ZNF232Q9UNY5 417 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 NLRP1Q9C000 1473 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CDC42BPBQ9Y5S2 1711 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 DIP2CQ9Y2E4 1556 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SEC31AO94979 1220 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 U2AF1L5P0DN76 240 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 ZNF157P51786 506 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 RPS6KA3P51812 740 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CCNHP51946 323 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 LSM11P83369 360 aaKnown RBP eCLIP3.18□□□□□ -1.9
LIG4-203ENST00000442234 U2AF1Q01081 240 aaKnown RBP eCLIP3.18□□□□□ -1.9
LIG4-203ENST00000442234 SCRN1Q12765 414 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 LRMPQ12912 555 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SNX1Q13596 522 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 VARS2Q5ST30 1063 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 CEP85LQ5SZL2 805 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CCDC183Q5T5S1 534 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CCDC30Q5VVM6 783 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 ISM2Q6H9L7 571 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 CPLX2Q6PUV4 134 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 DNAJC14Q6Y2X3 702 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 NOL8Q76FK4 1167 aaKnown RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 KCNH5Q8NCM2 988 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 BICD1Q96G01 975 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SCLT1Q96NL6 688 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 SETDB2Q96T68 719 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 BAG1Q99933 345 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 GLIS2Q9BZE0 524 aaPredicted RBP3.18□□□□□ -1.9
LIG4-203ENST00000442234 MAF1Q9H063 256 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 EXOC6BQ9Y2D4 811 aa3.18□□□□□ -1.9
LIG4-203ENST00000442234 DISP2A7MBM2 1401 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ABCC5O15440 1437 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 BCAR3O75815 825 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 URI1O94763 535 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 A1BGP04217 495 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 RPSAP08865 295 aaKnown RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 CCDC192P0DO97 292 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PRPHP41219 470 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PLA2G4AP47712 749 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SNW1Q13573 536 aaKnown RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 LAMB3Q13751 1172 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 TTLL6Q8N841 843 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 KHSRPQ92945 711 aaKnown RBP eCLIP3.17□□□□□ -1.9
LIG4-203ENST00000442234 KLRG1Q96E93 195 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 CFAP53Q96M91 514 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms