RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CCDC65Q8IXS2 484 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 SMIM23A6NLE4 172 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 KRT9P35527 623 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 HSPA2P54652 639 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 E7EVH7 732 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 ZBTB16Q05516 673 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 ZYXQ15942 572 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 CFAP157Q5JU67 520 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 CDAN1Q8IWY9 1227 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 JAKMIP2Q96AA8 810 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 IFT74Q96LB3 600 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 HECW2Q9P2P5 1572 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 PAXBP1Q9Y5B6 917 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 TACC1O75410 805 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 DNM1Q05193 864 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 AATFQ9NY61 560 aaKnown RBP eCLIP13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 ATP2C2O75185 946 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 HDAC1Q13547 482 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 KIF20BQ96Q89 1820 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 CCDC169A6NNP5 214 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 H0YIN7 160 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 CCT6AP40227 531 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 STX10O60499 249 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 GEN1Q17RS7 908 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 TBC1D32Q96NH3 1257 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 DENND2AQ9ULE3 1009 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 MAPKBP1O60336 1514 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 MBD4O95243 580 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 MYCLP12524 364 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 STRN3Q13033 797 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 ITGA6P23229 1130 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 CCDC6Q16204 474 aa13.55□□□□□ -0.24
CCDC88A-207ENST00000436346 FAM98CQ17RN3 349 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 C8orf58Q8NAV2 365 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 TRPC3Q13507 836 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 MSL1Q68DK7 614 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 NIM1KQ8IY84 436 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 KMT5BQ4FZB7 885 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 LARGE2Q8N3Y3 721 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 FNBP1Q96RU3 617 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 SPAG1Q07617 926 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 TCP10Q12799 353 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 PREX2Q70Z35 1606 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 KRT86O43790 486 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 DDX39AO00148 427 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 KIF5AQ12840 1032 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 SPOUT1Q5T280 376 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 ARHGAP45Q92619 1136 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 HOOK2Q96ED9 719 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 CCDC77Q9BR77 488 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 GUCA1BQ9UMX6 200 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 CREB3L3Q68CJ9 461 aa13.54□□□□□ -0.24
CCDC88A-207ENST00000436346 ANKRD12Q6UB98 2062 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 SEL1L2Q5TEA6 688 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 RUFY3Q7L099 469 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 BRAPQ7Z569 592 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 SELENOSQ9BQE4 189 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 SKILP12757 684 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 FCHSD1Q86WN1 690 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 SMCR8Q8TEV9 937 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 ANAPC4Q9UJX5 808 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 M0QZ92 97 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 CCDC42Q96M95 316 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 ZRANB1Q9UGI0 708 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 IGHDP01880 384 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 RPL13P26373 211 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 GTF2F1P35269 517 aaKnown RBP eCLIP13.53□□□□□ -0.247e-11■■■■□ 23.4
CCDC88A-207ENST00000436346 LETM2Q2VYF4 491 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 KIAA1524Q8TCG1 905 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 FBF1Q8TES7 1133 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 CFAP57Q96MR6 1250 aa13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 STK10O94804 968 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 UAP1Q16222 522 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 DPP8Q6V1X1 898 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-207ENST00000436346 PRKG1Q13976 671 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 MTHFSDQ2M296 383 aaKnown RBP13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 ARHGEF10O15013 1369 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 ZMYM3Q14202 1370 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 MAST3O60307 1309 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 FAM89AQ96GI7 184 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 ARFGAP3Q9NP61 516 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 PFDN4Q9NQP4 134 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 MCM6Q14566 821 aa13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 SRRTQ9BXP5 876 aaKnown RBP13.52□□□□□ -0.24
CCDC88A-207ENST00000436346 RNMTO43148 476 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 HSPA4P34932 840 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 TCIRG1Q13488 830 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 MRPL50Q8N5N7 158 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 SMC6Q96SB8 1091 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 SV2BQ7L1I2 683 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 FNBP4Q8N3X1 1017 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 TTC14Q96N46 770 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 KRT83P78385 493 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 IFT81Q8WYA0 676 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 EDC4Q6P2E9 1401 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 FMNL3Q8IVF7 1028 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 PDE4DIPQ5VU43 2346 aa13.52□□□□□ -0.25
CCDC88A-207ENST00000436346 CITO14578 2027 aa13.51□□□□□ -0.25
CCDC88A-207ENST00000436346 F13A1P00488 732 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms