RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 NFXL1Q6ZNB6 911 aa12.21□□□□□ -0.46
HDAC9-210ENST00000428307 RPGRQ92834 1020 aaKnown RBP12.21□□□□□ -0.46
HDAC9-210ENST00000428307 SPATA32Q96LK8 384 aa12.21□□□□□ -0.46
HDAC9-210ENST00000428307 GPR101Q96P66 508 aaPredicted RBP12.21□□□□□ -0.46
HDAC9-210ENST00000428307 ZKSCAN3Q9BRR0 538 aa12.21□□□□□ -0.46
HDAC9-210ENST00000428307 RTN4Q9NQC3 1192 aaKnown RBP12.21□□□□□ -0.46
HDAC9-210ENST00000428307 KIF3AQ9Y496 699 aa12.21□□□□□ -0.46
HDAC9-210ENST00000428307 SALL1Q9NSC2 1324 aa12.21□□□□□ -0.46
HDAC9-210ENST00000428307 TCHHQ07283 1943 aa12.21□□□□□ -0.46
HDAC9-210ENST00000428307 LAMB2P55268 1798 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 SH2B2O14492 632 aaPredicted RBP12.2□□□□□ -0.46
HDAC9-210ENST00000428307 DHX16O60231 1041 aaKnown RBP12.2□□□□□ -0.46
HDAC9-210ENST00000428307 MECOMQ03112 1051 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 TMEM67Q5HYA8 995 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 MICU3Q86XE3 530 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 IGDCC4Q8TDY8 1250 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 RIOK1Q9BRS2 568 aaKnown RBP12.2□□□□□ -0.46
HDAC9-210ENST00000428307 MYL10Q9BUA6 226 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 ARAP2Q8WZ64 1704 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 IFIT3O14879 490 aaKnown RBP12.2□□□□□ -0.46
HDAC9-210ENST00000428307 CHMP4CQ96CF2 233 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 ZSCAN16Q9H4T2 348 aaPredicted RBP12.2□□□□□ -0.46
HDAC9-210ENST00000428307 GJB4Q9NTQ9 266 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 LAMA4Q16363 1823 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 WDR19Q8NEZ3 1342 aa12.2□□□□□ -0.46
HDAC9-210ENST00000428307 MYH7P12883 1935 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 SEMA3EO15041 775 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 METAP2P50579 478 aaKnown RBP eCLIP12.19□□□□□ -0.46
HDAC9-210ENST00000428307 ST5P78524 1137 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 APOA5Q6Q788 366 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 RNF214Q8ND24 703 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 NSUN4Q96CB9 384 aaKnown RBP12.19□□□□□ -0.46
HDAC9-210ENST00000428307 SCAND2PQ9GZW5 306 aaPredicted RBP12.19□□□□□ -0.46
HDAC9-210ENST00000428307 ORC3Q9UBD5 711 aaPredicted RBP12.19□□□□□ -0.46
HDAC9-210ENST00000428307 ZMYM6O95789 1325 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 CYP2D7A0A087X1C5 515 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 GOLGA6L4A6NEF3 574 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 PPARAQ07869 468 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 DDR1Q08345 913 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 LEO1Q8WVC0 666 aaPredicted RBP12.19□□□□□ -0.46
HDAC9-210ENST00000428307 TMEM87BQ96K49 555 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 CNNM2Q9H8M5 875 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 LY9Q9HBG7 655 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 AATFQ9NY61 560 aaKnown RBP eCLIP12.19□□□□□ -0.46
HDAC9-210ENST00000428307 LY75O60449 1722 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 SBF2Q86WG5 1849 aa12.19□□□□□ -0.46
HDAC9-210ENST00000428307 CCDC183Q5T5S1 534 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 KRT23Q9C075 422 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 FTOQ9C0B1 505 aaKnown RBP eCLIP12.18□□□□□ -0.46
HDAC9-210ENST00000428307 ZBTB43O43298 467 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 APBA3O96018 575 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 CDC27P30260 824 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 STAG1Q8WVM7 1258 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 PHKBQ93100 1093 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 C8orf76Q96K31 380 aa12.18□□□□□ -0.46
HDAC9-210ENST00000428307 TAF1LQ8IZX4 1826 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 GOLGB1Q14789 3259 aaKnown RBP12.17□□□□□ -0.46
HDAC9-210ENST00000428307 XDHP47989 1333 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 RBM6P78332 1123 aaKnown RBP12.17□□□□□ -0.46
HDAC9-210ENST00000428307 GPSM2P81274 684 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 CRY2Q49AN0 593 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 LEMD3Q9Y2U8 911 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 SLC12A7Q9Y666 1083 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 ELP1O95163 1332 aa12.17□□□□□ -0.46
HDAC9-210ENST00000428307 CCDC69A6NI79 296 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 PRDM1O75626 825 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 POLR3DP05423 398 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-210ENST00000428307 LIG1P18858 919 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 GIMAP6Q6P9H5 292 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 AIFM3Q96NN9 605 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 TSPY26PQ9H489 355 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 CFAP45Q9UL16 551 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 IRS2Q9Y4H2 1338 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 USP17L12C9JPN9 530 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 USP17L21D6R901 530 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 POLRMTO00411 1230 aaKnown RBP12.16□□□□□ -0.46
HDAC9-210ENST00000428307 LIFRP42702 1097 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 EVX2Q03828 476 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 ZNF827Q17R98 1081 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 SGMS1Q86VZ5 419 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 DZIP1Q86YF9 867 aaKnown RBP12.16□□□□□ -0.46
HDAC9-210ENST00000428307 FBXO18Q8NFZ0 1043 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 ANP32BQ92688 251 aaKnown RBP12.16□□□□□ -0.46
HDAC9-210ENST00000428307 PGBD1Q96JS3 809 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 RNF41Q9H4P4 317 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-210ENST00000428307 COL24A1Q17RW2 1714 aa12.16□□□□□ -0.46
HDAC9-210ENST00000428307 GOLGA8AA7E2F4 631 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 UFL1O94874 794 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 SART3Q15020 963 aaKnown RBP12.15□□□□□ -0.46
HDAC9-210ENST00000428307 CAMK4Q16566 473 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 SLC4A8Q2Y0W8 1093 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 ILDR1Q86SU0 546 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-210ENST00000428307 CCDC82Q8N4S0 544 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 RBM17Q96I25 401 aaKnown RBP12.15□□□□□ -0.46
HDAC9-210ENST00000428307 USP28Q96RU2 1077 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 TNRC6CQ9HCJ0 1690 aaKnown RBP12.15□□□□□ -0.46
HDAC9-210ENST00000428307 C4AP0C0L4 1744 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 ERICH2A1L162 156 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 UBE2Q2LH0YL09 131 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 WTAPQ15007 396 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms