RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 FKBP4Q02790 459 aaKnown RBP eCLIP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 PRPF40BQ6NWY9 871 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 OTOP1Q7RTM1 612 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 TMC7Q7Z402 723 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 IFNLR1Q8IU57 520 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 GLIS3Q8NEA6 775 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 CSGALNACT1Q8TDX6 532 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 PHACTR3Q96KR7 559 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ASB2Q96Q27 587 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 KCNH6Q9H252 994 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 TLE6Q9H808 572 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 MAP3K20Q9NYL2 800 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 TLL2Q9Y6L7 1015 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ANKRD30AQ9BXX3 1397 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ZFYVE16Q7Z3T8 1539 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 FSD2A1L4K1 749 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 RASSF10A6NK89 507 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 RGS12O14924 1447 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 HMGCRP04035 888 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 HNF1BP35680 557 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 KPNA1P52294 538 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 GRIN2AQ12879 1464 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 SUZ12Q15022 739 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 VWA2Q5GFL6 755 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 OTOP2Q7RTS6 562 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ZC3H18Q86VM9 953 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 KIAA0825Q8IV33 1275 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 LRIG1Q96JA1 1093 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 DLC1Q96QB1 1528 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 CUEDC2Q9H467 287 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ICE1Q9Y2F5 2266 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 PCDH11XQ9BZA7 1347 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 PCDH11YQ9BZA8 1340 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 FIGNL2A6NMB9 653 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 PRR33A8MZF0 331 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 TREHO43280 583 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 DNAJB2P25686 324 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 SEMA3FQ13275 785 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 RRP12Q5JTH9 1297 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 ECHDC1Q9NTX5 307 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 SEPT9Q9UHD8 586 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 PCDHB12Q9Y5F1 795 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 UNC79Q9P2D8 2635 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC180Q9P1Z9 1646 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 DOPEY2Q9Y3R5 2298 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 NOP56O00567 594 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 AMHP03971 560 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 RASGRF1Q13972 1273 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 PPP1R18Q6NYC8 613 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 CAPN12Q6ZSI9 719 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 ANKRD18AQ8IVF6 992 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 NFATC2IPQ8NCF5 419 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 WRNIP1Q96S55 665 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 NUSAP1Q9BXS6 441 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 DNAI2Q9GZS0 605 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 KLF15Q9UIH9 416 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 NAP1L2Q9ULW6 460 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 NCOA1Q15788 1441 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 CEP162Q5TB80 1403 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 FAM205AQ6ZU69 1335 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 DDTLA6NHG4 134 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 AXIN1O15169 862 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 INPP4BO15327 924 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 PER1O15534 1290 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 ZIC2O95409 532 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 CFBP00751 764 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 EPS15P42566 896 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 CEP135Q66GS9 1140 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 USP53Q70EK8 1073 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 IFNL1Q8IU54 200 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 MYL10Q9BUA6 226 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 SIL1Q9H173 461 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 MYH16Q9H6N6 1097 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 MTMR10Q9NXD2 777 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 SLC8A2Q9UPR5 921 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 SETD1BQ9UPS6 1966 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 ABCC2Q92887 1545 aa3.3□□□□□ -1.88
CCDC88A-205ENST00000426576 NUP155O75694 1391 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SPATA31A5Q5VU36 1347 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SPATA31A7Q8IWB4 1347 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 TCP10L2B9ZVM9 353 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 H3BQ06 376 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 INHAP05111 366 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 RPS12P25398 132 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 NUBP1P53384 320 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 CHST3Q7LGC8 479 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 WAPLQ7Z5K2 1190 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 TCP11Q8WWU5 503 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 LRRC46Q96FV0 321 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 APOL5Q9BWW9 433 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SLC7A5P2Q9GIP4 190 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 NACA2Q9H009 215 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 DBNDD1Q9H9R9 158 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 POLR3EQ9NVU0 708 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 PTPN22Q9Y2R2 807 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 ZBTB12Q9Y330 459 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SETD5Q9C0A6 1442 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 INTS1Q8N201 2190 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 CAMSAP1Q5T5Y3 1602 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms