RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PRELPP51888 382 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 TNFAIP1Q13829 316 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 RBM26Q5T8P6 1007 aaKnown RBP12.07□□□□□ -0.48
CD44-207ENST00000425428 RNF20Q5VTR2 975 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 TEX11Q8IYF3 940 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 USP40Q9NVE5 1235 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 GPRC5DQ9NZD1 345 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 HACL1Q9UJ83 578 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 GAKO14976 1311 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 A0A0D9SFI3 127 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 EPB41L2O43491 1005 aaKnown RBP12.07□□□□□ -0.48
CD44-207ENST00000425428 TDO2P48775 406 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 PPP4CP60510 307 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 OSBP2Q969R2 916 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 GMLQ99445 158 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 PUS7LQ9H0K6 701 aaKnown RBP12.07□□□□□ -0.48
CD44-207ENST00000425428 ARMT1Q9H993 441 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 ADARB2Q9NS39 739 aaKnown RBP12.07□□□□□ -0.48
CD44-207ENST00000425428 ATP8A2Q9NTI2 1148 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 DAGLAQ9Y4D2 1042 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 SCN4AP35499 1836 aa12.06□□□□□ -0.48
CD44-207ENST00000425428 PATL2C9JE40 543 aaKnown RBP12.06□□□□□ -0.48
CD44-207ENST00000425428 SLC3A2P08195 630 aaKnown RBP12.06□□□□□ -0.48
CD44-207ENST00000425428 ZNF280AP59817 542 aaPredicted RBP12.06□□□□□ -0.48
CD44-207ENST00000425428 KIF4BQ2VIQ3 1234 aa12.06□□□□□ -0.48
CD44-207ENST00000425428 PNMA8AQ86V59 439 aaPredicted RBP12.06□□□□□ -0.48
CD44-207ENST00000425428 MTMR14Q8NCE2 650 aa12.06□□□□□ -0.48
CD44-207ENST00000425428 NAPBQ9H115 298 aa12.06□□□□□ -0.48
CD44-207ENST00000425428 ZNF646O15015 1829 aaPredicted RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 ECM29Q5VYK3 1845 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 M0R2C6 588 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 GRIK5Q16478 980 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 GIMAP6Q6P9H5 292 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 STRBPQ96SI9 672 aaKnown RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 DSCC1Q9BVC3 393 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 TRIM34Q9BYJ4 488 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 U3KPZ7 1027 aaPredicted RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 SRCAPQ6ZRS2 3230 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 ZKSCAN1P17029 563 aaPredicted RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 IMMTQ16891 758 aaKnown RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 TBC1D10BQ4KMP7 808 aaPredicted RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 LCORLQ8N3X6 602 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 L3MBTL3Q96JM7 780 aaPredicted RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 SEC62Q99442 399 aaKnown RBP12.05□□□□□ -0.48
CD44-207ENST00000425428 VEZTQ9HBM0 779 aa12.05□□□□□ -0.48
CD44-207ENST00000425428 POLR3DP05423 398 aaPredicted RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 HLA-DOAP06340 250 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 DYNLL1P63167 89 aaKnown RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 C8orf34Q49A92 452 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 CCDC129Q6ZRS4 1044 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 USP50Q70EL3 339 aaPredicted RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 APOBEC3FQ8IUX4 373 aaKnown RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 ZSCAN29Q8IWY8 852 aaPredicted RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 SH3RF3Q8TEJ3 882 aaPredicted RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 TGFBRAP1Q8WUH2 860 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 DCPSQ96C86 337 aaKnown RBP12.04□□□□□ -0.48
CD44-207ENST00000425428 HOOK2Q96ED9 719 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 BACH2Q9BYV9 841 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 ZNF287Q9HBT7 754 aa12.04□□□□□ -0.48
CD44-207ENST00000425428 ZNF213O14771 459 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 HSPD1P10809 573 aaKnown RBP12.03□□□□□ -0.48
CD44-207ENST00000425428 VEGFAP15692 232 aaPredicted RBP12.03□□□□□ -0.48
CD44-207ENST00000425428 EPHX2P34913 555 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 PICALMQ13492 652 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 CDC42EP5Q6NZY7 148 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 SAMD7Q7Z3H4 446 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 ADGRA1Q86SQ6 560 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 TTC6Q86TZ1 520 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 RIOK1Q9BRS2 568 aaKnown RBP12.03□□□□□ -0.48
CD44-207ENST00000425428 TDRD3Q9H7E2 651 aaKnown RBP12.03□□□□□ -0.48
CD44-207ENST00000425428 MCM9Q9NXL9 1143 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 ARPP21Q9UBL0 812 aaPredicted RBP12.03□□□□□ -0.48
CD44-207ENST00000425428 MYH1P12882 1939 aa12.03□□□□□ -0.48
CD44-207ENST00000425428 WNT10BO00744 389 aa12.02□□□□□ -0.48
CD44-207ENST00000425428 EPS15P42566 896 aa12.02□□□□□ -0.48
CD44-207ENST00000425428 SLFNL1Q499Z3 407 aa12.02□□□□□ -0.48
CD44-207ENST00000425428 EAPPQ56P03 285 aaPredicted RBP12.02□□□□□ -0.48
CD44-207ENST00000425428 FKBP1CQ5VVH2 108 aa12.02□□□□□ -0.48
CD44-207ENST00000425428 APOBEC3HQ6NTF7 200 aaKnown RBP12.02□□□□□ -0.48
CD44-207ENST00000425428 ZNF589Q86UQ0 364 aaPredicted RBP12.02□□□□□ -0.48
CD44-207ENST00000425428 IFNL3Q8IZI9 196 aa12.02□□□□□ -0.48
CD44-207ENST00000425428 PRMT6Q96LA8 375 aaPredicted RBP12.02□□□□□ -0.48
CD44-207ENST00000425428 DHX36Q9H2U1 1008 aaKnown RBP12.02□□□□□ -0.48
CD44-207ENST00000425428 CLEC11AQ9Y240 323 aa12.02□□□□□ -0.48
CD44-207ENST00000425428 NPM3O75607 178 aaKnown RBP12.02□□□□□ -0.49
CD44-207ENST00000425428 TRDNQ13061 729 aa12.02□□□□□ -0.49
CD44-207ENST00000425428 SPDYE2Q495Y8 402 aa12.02□□□□□ -0.49
CD44-207ENST00000425428 MAPKAPK5Q8IW41 473 aa12.02□□□□□ -0.49
CD44-207ENST00000425428 ZNF384Q8TF68 577 aa12.02□□□□□ -0.49
CD44-207ENST00000425428 ZNF70Q9UC06 446 aaPredicted RBP12.02□□□□□ -0.49
CD44-207ENST00000425428 NAV1Q8NEY1 1877 aa12.02□□□□□ -0.49
CD44-207ENST00000425428 CLRN2A0PK11 232 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 MINDY4BA8MYZ0 360 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 ENTPD3O75355 529 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 KRT32Q14532 448 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 ALX1Q15699 326 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 SULF1Q8IWU6 871 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 ZC3H15Q8WU90 426 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms