RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 BCAP29Q9UHQ4 241 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CSADQ9Y600 493 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 PI4KAP2A4QPH2 592 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 ATP11AP98196 1134 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 ARFGAP2Q8N6H7 521 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 PI4KAP1Q8N8J0 262 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 CNBD1Q8NA66 436 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 FAM193BQ96PV7 902 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 ARHGEF11O15085 1522 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 ADCY5O95622 1261 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 MCM7P33993 719 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 PLCD1P51178 756 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 MNAT1P51948 309 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 IRX3P78415 501 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 UAP1Q16222 522 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 OTUD6AQ7L8S5 288 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 CEP120Q8N960 986 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 TPCN1Q9ULQ1 816 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 RIMBP2O15034 1052 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 PPFIA2O75334 1257 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 INTS8Q75QN2 995 aaKnown RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 LEO1Q8WVC0 666 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 AS3MTQ9HBK9 375 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 IPO11Q9UI26 975 aaKnown RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 F6X3S4 739 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 PTGS1P23219 599 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 NCAPD3P42695 1498 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 CCDC87Q9NVE4 849 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 ALDH1B1P30837 517 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 LACTBP83111 547 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 CROCCP2Q86T23 111 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 ATRIPQ8WXE1 791 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 LRRC59Q96AG4 307 aaKnown RBP7.66□□□□□ -1.18
SCN1A-204ENST00000423058 NESP48681 1621 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 RAD50Q92878 1312 aa7.66□□□□□ -1.18
SCN1A-204ENST00000423058 PTPDC1A2A3K4 754 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 BCRP11274 1271 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 NIM1KQ8IY84 436 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 SSH1Q8WYL5 1049 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 RALGAPBQ86X10 1494 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 ARHGEF35A5YM69 484 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 SPOPO43791 374 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 TNFAIP1Q13829 316 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 IQUBQ8NA54 791 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 LZTS2Q9BRK4 669 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 TOPBP1Q92547 1522 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 PCDH11XQ9BZA7 1347 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 PCDH11YQ9BZA8 1340 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 BRAPQ7Z569 592 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 CACNA2D3Q8IZS8 1091 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 ARHGAP24Q8N264 748 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 HAUS1Q96CS2 278 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 SEPT10Q9P0V9 454 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 TFIP11Q9UBB9 837 aaKnown RBP7.65□□□□□ -1.18
SCN1A-204ENST00000423058 KIF21AQ7Z4S6 1674 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 RTL1A6NKG5 1358 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 ESYT2A0FGR8 921 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 I3L4J1 428 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 ATF7P17544 494 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-204ENST00000423058 MRPS27Q92552 414 aaKnown RBP7.65□□□□□ -1.18
SCN1A-204ENST00000423058 ABCC5O15440 1437 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 TNRQ92752 1358 aa7.65□□□□□ -1.18
SCN1A-204ENST00000423058 HARSP12081 509 aaKnown RBP7.65□□□□□ -1.19
SCN1A-204ENST00000423058 CCDC62Q6P9F0 684 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 NME9Q86XW9 330 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 PNMA2Q9UL42 364 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 IL16Q14005 1332 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 MGEA5O60502 916 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 CCNT1O60563 726 aaKnown RBP7.65□□□□□ -1.19
SCN1A-204ENST00000423058 AKAP4Q5JQC9 854 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 STMN1P16949 149 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 GBP1P32455 592 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 RAPGEF1Q13905 1077 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 TEX11Q8IYF3 940 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 MIS12Q9H081 205 aa7.65□□□□□ -1.19
SCN1A-204ENST00000423058 MARCKSP29966 332 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 TERF1P54274 439 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 TRIM14Q14142 442 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 ATL3Q6DD88 541 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 GGA1Q9UJY5 639 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 TNFAIP3P21580 790 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 CEP85LQ5SZL2 805 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 UBLCP1Q8WVY7 318 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 KRT3P12035 628 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 RPS6KA2Q15349 733 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 Q6ZUG5 572 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 CNGA4Q8IV77 575 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 CCPG1Q9ULG6 757 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 GINS2Q9Y248 185 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 F8W8V4 182 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 POLR2BP30876 1174 aaKnown RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 TRIML1Q8N9V2 468 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 DHX58Q96C10 678 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 IWS1Q96ST2 819 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 ZSCAN22P10073 491 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 RARSP54136 660 aaKnown RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 GPR162Q16538 588 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 EAPPQ56P03 285 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 CASC4Q6P4E1 433 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 DCUN1D2Q6PH85 259 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms