RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 DLGAP3O95886 979 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 TCF3P15923 654 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 LIG1P18858 919 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 CHRNA4P43681 627 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 IREB2P48200 963 aaKnown RBP4.34□□□□□ -1.71
VPS41-206ENST00000418457 RASIP1Q5U651 963 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 NUTM2GQ5VZR2 741 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 SCARA3Q6AZY7 606 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 FDX2Q6P4F2 183 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 ERMP1Q7Z2K6 904 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 CD163Q86VB7 1156 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 TXNRD3Q86VQ6 643 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 GRIN3AQ8TCU5 1115 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 WFDC12Q8WWY7 111 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 ACSBG1Q96GR2 724 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 TMEM74Q96NL1 305 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 TMPRSS13Q9BYE2 586 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 CEP41Q9BYV8 373 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 CCDC86Q9H6F5 360 aaKnown RBP4.34□□□□□ -1.71
VPS41-206ENST00000418457 CYP4F12Q9HCS2 524 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 RAD18Q9NS91 495 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 KBTBD4Q9NVX7 518 aa4.34□□□□□ -1.71
VPS41-206ENST00000418457 MINDY4BA8MYZ0 360 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 AOC2O75106 756 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 SLFN14P0C7P3 912 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 GLB1P16278 677 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 TFE3P19532 575 aaPredicted RBP4.33□□□□□ -1.72
VPS41-206ENST00000418457 NOS3P29474 1203 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 HDLBPQ00341 1268 aaKnown RBP4.33□□□□□ -1.72
VPS41-206ENST00000418457 LMNB2Q03252 620 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 AKAP4Q5JQC9 854 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 ANKRD34AQ69YU3 496 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 SMG8Q8ND04 991 aaKnown RBP4.33□□□□□ -1.72
VPS41-206ENST00000418457 PHC3Q8NDX5 983 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 GPBAR1Q8TDU6 330 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 WDR18Q9BV38 432 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 MIR1-1HGQ9H1L0 117 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 SUGCTQ9HAC7 445 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 COPRSQ9NQ92 184 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 TLR6Q9Y2C9 796 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 PCDHB5Q9Y5E4 795 aa4.33□□□□□ -1.72
VPS41-206ENST00000418457 SYNGAP1Q96PV0 1343 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 SART1O43290 800 aaKnown RBP4.32□□□□□ -1.72
VPS41-206ENST00000418457 ZNF862O60290 1169 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 GATA4P43694 442 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 CAMK2GQ13555 558 aaPredicted RBP4.32□□□□□ -1.72
VPS41-206ENST00000418457 KIF4BQ2VIQ3 1234 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 PLA2G4EQ3MJ16 856 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 C9orf131Q5VYM1 1079 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 DIEXFQ68CQ4 756 aaKnown RBP4.32□□□□□ -1.72
VPS41-206ENST00000418457 MPRIPQ6WCQ1 1025 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 Q6ZS46 218 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 USP48Q86UV5 1035 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 METTL16Q86W50 562 aaKnown RBP4.32□□□□□ -1.72
VPS41-206ENST00000418457 NT5DC4Q86YG4 428 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 TRIM42Q8IWZ5 723 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 C12orf50Q8NA57 414 aaPredicted RBP4.32□□□□□ -1.72
VPS41-206ENST00000418457 GAL3ST3Q96A11 431 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 WDR89Q96FK6 387 aaPredicted RBP4.32□□□□□ -1.72
VPS41-206ENST00000418457 RHOVQ96L33 236 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 CACNA2D2Q9NY47 1150 aa4.32□□□□□ -1.72
VPS41-206ENST00000418457 PF4P02776 101 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 EIF4A3P38919 411 aaKnown RBP4.31□□□□□ -1.72
VPS41-206ENST00000418457 FAM160A1Q05DH4 1040 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 SOX4Q06945 474 aaPredicted RBP4.31□□□□□ -1.72
VPS41-206ENST00000418457 SEPT6Q14141 434 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 ZNF394Q53GI3 561 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 SNAP47Q5SQN1 464 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 CCDC84Q86UT8 332 aaPredicted RBP4.31□□□□□ -1.72
VPS41-206ENST00000418457 MEGF10Q96KG7 1140 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 PCDHA4Q9UN74 947 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 AP4E1Q9UPM8 1137 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 PCDHGB7Q9Y5F8 929 aa4.31□□□□□ -1.72
VPS41-206ENST00000418457 TMPRSS2O15393 492 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 GAS2O43903 313 aaKnown RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 TIAF1O95411 115 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 ADH5P11766 374 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 DRD2P14416 443 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 ERCC5P28715 1186 aaPredicted RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 PREPP48147 710 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 ID3Q02535 119 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 PTPN11Q06124 597 aaPredicted RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 UVSSAQ2YD98 709 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 DYMQ7RTS9 669 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 DZIP1LQ8IYY4 767 aaKnown RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 ZNF654Q8IZM8 581 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 GOLM1Q8NBJ4 401 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 JARID2Q92833 1246 aaPredicted RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 ELMO3Q96BJ8 720 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 FAM46AQ96IP4 442 aaKnown RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 UBL7Q96S82 380 aaPredicted RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 IGSF5Q9NSI5 407 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 ADAMTS1Q9UHI8 967 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 DDX41Q9UJV9 622 aaKnown RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 PPP1R9AQ9ULJ8 1098 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 SUPT16HQ9Y5B9 1047 aaKnown RBP4.3□□□□□ -1.72
VPS41-206ENST00000418457 PCDHGC5Q9Y5F6 944 aa4.3□□□□□ -1.72
VPS41-206ENST00000418457 DCDC2CA8MYV0 355 aa4.29□□□□□ -1.72
VPS41-206ENST00000418457 BPNT1O95861 308 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms