RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 AXIN2Q9Y2T1 843 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 V9GYY5 206 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 STRCP1A6NGW2 1772 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 STX10O60499 249 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 CUTAO60888 179 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 CYP2C19P33261 490 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 FANCCQ00597 558 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ZRSR1Q15695 479 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 TMED8Q6PL24 325 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 DDX46Q7L014 1031 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 TMEM139Q8IV31 216 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 REXO1L1PQ8IX06 675 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 TMEM87BQ96K49 555 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 DNAJC2Q99543 621 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 MAP3K14Q99558 947 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 IFNKQ9P0W0 207 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ORC3Q9UBD5 711 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ZHX1Q9UKY1 873 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 TNS3Q68CZ2 1445 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 ERVV-2B6SEH9 535 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 TADA3O75528 432 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 IFIT1P09914 478 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 PFKFB1P16118 471 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 FECHP22830 423 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 AIMP1Q12904 312 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 ELF2Q15723 593 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 LMBR1LQ6UX01 489 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 TTC5Q8N0Z6 440 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 ISCA1Q9BUE6 129 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 TSPYL1Q9H0U9 437 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 C19orf44Q9H6X5 657 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 PSD3Q9NYI0 1048 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 CALCOCO1Q9P1Z2 691 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 CLIC4Q9Y696 253 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 XIRP1Q702N8 1843 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 LAMB1P07942 1786 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 CDHR2Q9BYE9 1310 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 RIC1Q4ADV7 1423 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 PHLPP1O60346 1717 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 M0R2C6 588 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 GOLIM4O00461 696 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 MUM1L1Q5H9M0 696 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 SYNE3Q6ZMZ3 975 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 GPR161Q8N6U8 529 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 NFATC2IPQ8NCF5 419 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 SPATA20Q8TB22 786 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 FTOQ9C0B1 505 aaKnown RBP eCLIP6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 HOOK1Q9UJC3 728 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 CASZ1Q86V15 1759 aa6.62□□□□□ -1.35
CCDC88A-203ENST00000412148 A0A1B0GUL7 405 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 A0A1B0GVL5 298 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 TULP2O00295 520 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 SEMA3EO15041 775 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 CSF1RP07333 972 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 PNMA6AP0CW24 399 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF18P17022 549 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 LIFRP42702 1097 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 SARSP49591 514 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 CLCN6P51797 869 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 ANTXR2P58335 489 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 MAP3K9P80192 1104 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 MDM2Q00987 491 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF771Q7L3S4 317 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 RSRC2Q7L4I2 434 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 TMC6Q7Z403 805 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 DACH1Q9UI36 760 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 MROH7-TTC4A0A0A0MT08 1334 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 PRC1O43663 620 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 TUBBP07437 444 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 SYKP43405 635 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 NAA30Q147X3 362 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 TTF1Q15361 905 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 UBE3CQ15386 1083 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 SF3A1Q15459 793 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 KANK3Q6NY19 840 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 KRT28Q7Z3Y7 464 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 MLKLQ8NB16 471 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 ENOX1Q8TC92 643 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 HNRNPLLQ8WVV9 542 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 RABGGTAQ92696 567 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 OSBP2Q969R2 916 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 NAA15Q9BXJ9 866 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 ANGEL1Q9UNK9 670 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 TBC1D2BQ9UPU7 963 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 PARP3Q9Y6F1 533 aa6.61□□□□□ -1.35
CCDC88A-203ENST00000412148 CYP27B1O15528 508 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 CAPN15O75808 1086 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 FGAP02671 866 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 MYL6BP14649 208 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 ERCC5P28715 1186 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 CCT2P78371 535 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 NTRK3Q16288 839 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 WASF1Q92558 559 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 NCOA5Q9HCD5 579 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 MYH8P13535 1937 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF831Q5JPB2 1677 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 KLF18A0A0U1RQI7 1052 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 NBPF26B4DH59 902 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 POTEB2H3BUK9 544 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms