RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 DENND2AQ9ULE3 1009 aa13.56□□□□□ -0.24
LINC00539-201ENST00000411525 RNF113AO15541 343 aaKnown RBP13.55□□□□□ -0.24
LINC00539-201ENST00000411525 KIF4BQ2VIQ3 1234 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 ZMYM1Q5SVZ6 1142 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 RBM26Q5T8P6 1007 aaKnown RBP13.55□□□□□ -0.24
LINC00539-201ENST00000411525 ZSCAN25Q6NSZ9 544 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 RGMBQ6NW40 437 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 KIAA1211Q6ZU35 1233 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 ZNF804AQ7Z570 1209 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 SULF1Q8IWU6 871 aa13.55□□□□□ -0.24
LINC00539-201ENST00000411525 LSG1Q9H089 658 aaKnown RBP13.55□□□□□ -0.24
LINC00539-201ENST00000411525 GBA2Q9HCG7 927 aaPredicted RBP13.55□□□□□ -0.24
LINC00539-201ENST00000411525 CCDC85CA6NKD9 419 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 CHGBP05060 677 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 MCCP23508 829 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 TXNRD3Q86VQ6 643 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 AGBL3Q8NEM8 1001 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 HELLSQ9NRZ9 838 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 TSKSQ9UJT2 592 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 IQSEC3Q9UPP2 1182 aaPredicted RBP13.54□□□□□ -0.24
LINC00539-201ENST00000411525 CCDC171Q6TFL3 1326 aa13.54□□□□□ -0.24
LINC00539-201ENST00000411525 FRAT2O75474 233 aaPredicted RBP13.53□□□□□ -0.24
LINC00539-201ENST00000411525 IDH1O75874 414 aaKnown RBP13.53□□□□□ -0.24
LINC00539-201ENST00000411525 ADD2P35612 726 aa13.53□□□□□ -0.24
LINC00539-201ENST00000411525 MCMDC2Q4G0Z9 681 aa13.53□□□□□ -0.24
LINC00539-201ENST00000411525 ZNF589Q86UQ0 364 aaPredicted RBP13.53□□□□□ -0.24
LINC00539-201ENST00000411525 REM2Q8IYK8 340 aaPredicted RBP13.53□□□□□ -0.24
LINC00539-201ENST00000411525 APPBP2Q92624 585 aa13.53□□□□□ -0.24
LINC00539-201ENST00000411525 DDRGK1Q96HY6 314 aa13.53□□□□□ -0.24
LINC00539-201ENST00000411525 KCNQ5Q9NR82 932 aa13.53□□□□□ -0.24
LINC00539-201ENST00000411525 MAST3O60307 1309 aa13.53□□□□□ -0.24
LINC00539-201ENST00000411525 EGFRP00533 1210 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 PDE6AP16499 860 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 RGS19P49795 217 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 ZNF157P51786 506 aaPredicted RBP13.52□□□□□ -0.25
LINC00539-201ENST00000411525 ZNF280AP59817 542 aaPredicted RBP13.52□□□□□ -0.25
LINC00539-201ENST00000411525 MAP3K12Q12852 859 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 UBE3CQ15386 1083 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 RSBN1LQ6PCB5 846 aaPredicted RBP13.52□□□□□ -0.25
LINC00539-201ENST00000411525 PODNQ7Z5L7 613 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 SEC62Q99442 399 aaKnown RBP13.52□□□□□ -0.25
LINC00539-201ENST00000411525 SAGE1Q9NXZ1 904 aa13.52□□□□□ -0.25
LINC00539-201ENST00000411525 ADM5C9JUS6 153 aa13.51□□□□□ -0.25
LINC00539-201ENST00000411525 M0R2C6 588 aa13.51□□□□□ -0.25
LINC00539-201ENST00000411525 MLLT1Q03111 559 aaPredicted RBP13.51□□□□□ -0.25
LINC00539-201ENST00000411525 CHAF1AQ13111 956 aaPredicted RBP13.51□□□□□ -0.25
LINC00539-201ENST00000411525 SLFNL1Q499Z3 407 aa13.51□□□□□ -0.25
LINC00539-201ENST00000411525 SLC9C2Q5TAH2 1124 aa13.51□□□□□ -0.25
LINC00539-201ENST00000411525 TDRD7Q8NHU6 1098 aaKnown RBP13.51□□□□□ -0.25
LINC00539-201ENST00000411525 GGA3Q9NZ52 723 aa13.51□□□□□ -0.25
LINC00539-201ENST00000411525 PITPNM2Q9BZ72 1349 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 ZNF532Q9HCE3 1301 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 TCRBV5S4A2TA0A5A2 114 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 USP17L3A6NCW0 530 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 USP17L4A6NCW7 530 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 FAM155AB1AL88 458 aaPredicted RBP13.5□□□□□ -0.25
LINC00539-201ENST00000411525 USP17L8P0C7I0 530 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 IL1R1P14778 569 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 MMP14P50281 582 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 ANAPC15P60006 121 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 FKBP1BP68106 108 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 PTH1RQ03431 593 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 DGKZQ13574 1117 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 CCDC129Q6ZRS4 1044 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 USP17L1Q7RTZ2 530 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 MAGEB6Q8N7X4 407 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 OSBP2Q969R2 916 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 KIF2CQ99661 725 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 MCOLN1Q9GZU1 580 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 CD209Q9NNX6 404 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 LRP2BPQ9P2M1 347 aa13.5□□□□□ -0.25
LINC00539-201ENST00000411525 SALL1Q9NSC2 1324 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 HSPA4P34932 840 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 KIF23Q02241 960 aaPredicted RBP13.49□□□□□ -0.25
LINC00539-201ENST00000411525 ANGEL2Q5VTE6 544 aaKnown RBP13.49□□□□□ -0.25
LINC00539-201ENST00000411525 DLK2Q6UY11 383 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 ZGPATQ8N5A5 531 aaKnown RBP13.49□□□□□ -0.25
LINC00539-201ENST00000411525 WDR66Q8TBY9 1149 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 CDCA5Q96FF9 252 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 ZIC5Q96T25 663 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 COA1Q9GZY4 146 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 MYOZ2Q9NPC6 264 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 ABCF2Q9UG63 623 aa13.49□□□□□ -0.25
LINC00539-201ENST00000411525 RBM8AQ9Y5S9 174 aaKnown RBP13.49□□□□□ -0.25
LINC00539-201ENST00000411525 MYO3BQ8WXR4 1341 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 IGSF3O75054 1194 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 SLC10A3P09131 477 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 RABEP1Q15276 862 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 ERICH6Q7L0X2 663 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 OGFOD1Q8N543 542 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 MAP4K1Q92918 833 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 IL17RAQ96F46 866 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 IPO9Q96P70 1041 aaKnown RBP13.48□□□□□ -0.25
LINC00539-201ENST00000411525 GMLQ99445 158 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 DSCC1Q9BVC3 393 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 PUS7LQ9H0K6 701 aaKnown RBP13.48□□□□□ -0.25
LINC00539-201ENST00000411525 RAI14Q9P0K7 980 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 PALD1Q9ULE6 856 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 PAPPA2Q9BXP8 1791 aa13.48□□□□□ -0.25
LINC00539-201ENST00000411525 GPAA1O43292 621 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms