RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 FKBP1CQ5VVH2 108 aa23.49■■□□□ 1.35
SF3A1-202ENST00000411423 FAM83AQ86UY5 434 aa23.49■■□□□ 1.35
SF3A1-202ENST00000411423 SPATA5Q8NB90 893 aa23.49■■□□□ 1.35
SF3A1-202ENST00000411423 EAF2Q96CJ1 260 aaPredicted RBP23.49■■□□□ 1.35
SF3A1-202ENST00000411423 FAM198AQ9UFP1 575 aa23.49■■□□□ 1.35
SF3A1-202ENST00000411423 GORABQ5T7V8 394 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.48■■□□□ 1.35
SF3A1-202ENST00000411423 ZFPM1Q8IX07 1006 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 ZGPATQ8N5A5 531 aaKnown RBP23.48■■□□□ 1.35
SF3A1-202ENST00000411423 SLC10A4Q96EP9 437 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 WNK4Q96J92 1243 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 USP40Q9NVE5 1235 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 SAGE1Q9NXZ1 904 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 DBNLQ9UJU6 430 aaKnown RBP23.48■■□□□ 1.35
SF3A1-202ENST00000411423 DDX19BQ9UMR2 479 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 AKAP11Q9UKA4 1901 aa23.48■■□□□ 1.35
SF3A1-202ENST00000411423 CASP8AP2Q9UKL3 1982 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 IREB2P48200 963 aaKnown RBP23.47■■□□□ 1.35
SF3A1-202ENST00000411423 TM4SF4P48230 202 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 MECOMQ03112 1051 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 CNKSR2Q8WXI2 1034 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 CCDC8Q9H0W5 538 aaPredicted RBP23.47■■□□□ 1.35
SF3A1-202ENST00000411423 SNRKQ9NRH2 765 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 TMOD2Q9NZR1 351 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 RFX7Q2KHR2 1363 aa23.47■■□□□ 1.35
SF3A1-202ENST00000411423 LAMB1P07942 1786 aa23.46■■□□□ 1.35
SF3A1-202ENST00000411423 TCP10Q12799 353 aa23.46■■□□□ 1.35
SF3A1-202ENST00000411423 DZIP1Q86YF9 867 aaKnown RBP23.46■■□□□ 1.35
SF3A1-202ENST00000411423 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.46■■□□□ 1.35
SF3A1-202ENST00000411423 RPAP1Q9BWH6 1393 aaPredicted RBP23.46■■□□□ 1.35
SF3A1-202ENST00000411423 ELP3Q9H9T3 547 aa23.46■■□□□ 1.35
SF3A1-202ENST00000411423 ERICH6Q7L0X2 663 aa23.45■■□□□ 1.34
SF3A1-202ENST00000411423 ANKRD13AQ8IZ07 590 aa23.45■■□□□ 1.34
SF3A1-202ENST00000411423 FAM151AQ8WW52 585 aa23.45■■□□□ 1.34
SF3A1-202ENST00000411423 FAM163AQ96GL9 167 aaPredicted RBP23.45■■□□□ 1.34
SF3A1-202ENST00000411423 MROH7-TTC4A0A0A0MT08 1334 aa23.44■■□□□ 1.34
SF3A1-202ENST00000411423 UQCRFS1P1P0C7P4 283 aa23.44■■□□□ 1.34
SF3A1-202ENST00000411423 TTC39AQ5SRH9 613 aa23.44■■□□□ 1.34
SF3A1-202ENST00000411423 REM2Q8IYK8 340 aaPredicted RBP23.44■■□□□ 1.34
SF3A1-202ENST00000411423 NSUN4Q96CB9 384 aaKnown RBP23.44■■□□□ 1.34
SF3A1-202ENST00000411423 UNCXA6NJT0 531 aa23.43■■□□□ 1.34
SF3A1-202ENST00000411423 CAPN15O75808 1086 aa23.43■■□□□ 1.34
SF3A1-202ENST00000411423 BTDP43251 543 aa23.43■■□□□ 1.34
SF3A1-202ENST00000411423 VGLL4Q14135 290 aa23.43■■□□□ 1.34
SF3A1-202ENST00000411423 PDE3AQ14432 1141 aa23.43■■□□□ 1.34
SF3A1-202ENST00000411423 SPTY2D1Q68D10 685 aaPredicted RBP23.43■■□□□ 1.34
SF3A1-202ENST00000411423 R3HDMLQ9H3Y0 253 aa23.43■■□□□ 1.34
SF3A1-202ENST00000411423 DDX4Q9NQI0 724 aaKnown RBP23.43■■□□□ 1.34
SF3A1-202ENST00000411423 WDHD1O75717 1129 aaPredicted RBP23.42■■□□□ 1.34
SF3A1-202ENST00000411423 TBC1D8O95759 1140 aa23.42■■□□□ 1.34
SF3A1-202ENST00000411423 CYP2E1P05181 493 aaPredicted RBP23.42■■□□□ 1.34
SF3A1-202ENST00000411423 SLURP2P0DP57 97 aa23.42■■□□□ 1.34
SF3A1-202ENST00000411423 RHBDL3P58872 404 aa23.42■■□□□ 1.34
SF3A1-202ENST00000411423 MIGA2Q7L4E1 593 aa23.42■■□□□ 1.34
SF3A1-202ENST00000411423 SH3BP5LQ7L8J4 393 aa23.42■■□□□ 1.34
SF3A1-202ENST00000411423 RPAP2Q8IXW5 612 aaPredicted RBP23.42■■□□□ 1.34
SF3A1-202ENST00000411423 IL1RAPL2Q9NP60 686 aa23.42■■□□□ 1.34
SF3A1-202ENST00000411423 MYO5AQ9Y4I1 1855 aaKnown RBP23.42■■□□□ 1.34
SF3A1-202ENST00000411423 GPR75-ASB3A0A0A6YYF3 556 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 ZBTB48P10074 688 aaPredicted RBP23.41■■□□□ 1.34
SF3A1-202ENST00000411423 ZAP70P43403 619 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 RGS3P49796 1198 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 MAP3K9P80192 1104 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 CCDC158Q5M9N0 1113 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 OPTNQ96CV9 577 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 ZNF512BQ96KM6 892 aaPredicted RBP23.41■■□□□ 1.34
SF3A1-202ENST00000411423 IDI2Q9BXS1 227 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 SNCAIPQ9Y6H5 919 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 NDUFB9Q9Y6M9 179 aa23.41■■□□□ 1.34
SF3A1-202ENST00000411423 ATRNL1Q5VV63 1379 aa23.4■■□□□ 1.34
SF3A1-202ENST00000411423 IGF2BP3O00425 579 aaKnown RBP eCLIP23.4■■□□□ 1.34
SF3A1-202ENST00000411423 RHPN1Q8TCX5 695 aa23.4■■□□□ 1.34
SF3A1-202ENST00000411423 ZKSCAN4Q969J2 545 aaPredicted RBP23.4■■□□□ 1.34
SF3A1-202ENST00000411423 PIH1D3Q9NQM4 214 aaKnown RBP23.4■■□□□ 1.34
SF3A1-202ENST00000411423 RAI14Q9P0K7 980 aa23.4■■□□□ 1.34
SF3A1-202ENST00000411423 APBB1O00213 710 aa23.39■■□□□ 1.33
SF3A1-202ENST00000411423 SREBF2Q12772 1141 aa23.39■■□□□ 1.33
SF3A1-202ENST00000411423 AACSQ86V21 672 aa23.39■■□□□ 1.33
SF3A1-202ENST00000411423 YTHDC1Q96MU7 727 aaKnown RBP23.39■■□□□ 1.33
SF3A1-202ENST00000411423 WRNIP1Q96S55 665 aa23.39■■□□□ 1.33
SF3A1-202ENST00000411423 PTPN18Q99952 460 aa23.39■■□□□ 1.33
SF3A1-202ENST00000411423 MAST2Q6P0Q8 1798 aa23.38■■□□□ 1.33
SF3A1-202ENST00000411423 MANSC4A6NHS7 340 aaPredicted RBP23.38■■□□□ 1.33
SF3A1-202ENST00000411423 INPP5BP32019 993 aa23.38■■□□□ 1.33
SF3A1-202ENST00000411423 ADGRA1Q86SQ6 560 aa23.38■■□□□ 1.33
SF3A1-202ENST00000411423 IFNL1Q8IU54 200 aa23.38■■□□□ 1.33
SF3A1-202ENST00000411423 ERC1Q8IUD2 1116 aa23.38■■□□□ 1.33
SF3A1-202ENST00000411423 MS4A4AQ96JQ5 239 aa23.38■■□□□ 1.33
SF3A1-202ENST00000411423 DDTLA6NHG4 134 aaPredicted RBP23.37■■□□□ 1.33
SF3A1-202ENST00000411423 SLF2Q8IX21 1173 aa23.37■■□□□ 1.33
SF3A1-202ENST00000411423 LRP2BPQ9P2M1 347 aa23.37■■□□□ 1.33
SF3A1-202ENST00000411423 ZNF112Q9UJU3 913 aa23.37■■□□□ 1.33
SF3A1-202ENST00000411423 DOCK2Q92608 1830 aa23.36■■□□□ 1.33
SF3A1-202ENST00000411423 TESPA1A2RU30 521 aaPredicted RBP23.36■■□□□ 1.33
SF3A1-202ENST00000411423 ENTPD3O75355 529 aa23.36■■□□□ 1.33
SF3A1-202ENST00000411423 PICALMQ13492 652 aa23.36■■□□□ 1.33
SF3A1-202ENST00000411423 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.36■■□□□ 1.33
SF3A1-202ENST00000411423 OTUD5Q96G74 571 aa23.36■■□□□ 1.33
SF3A1-202ENST00000411423 ZNF341Q9BYN7 854 aa23.36■■□□□ 1.33
SF3A1-202ENST00000411423 MCOLN1Q9GZU1 580 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms