RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CELA3AP09093 270 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 TPTE2Q6XPS3 522 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 PLD4Q96BZ4 506 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 BHLHE41Q9C0J9 482 aaPredicted RBP9.28□□□□□ -0.92
USP40-202ENST00000409945 EFCC1Q9HA90 598 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 MBIPQ9NS73 344 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 STARD13Q9Y3M8 1113 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 ANKRD50Q9ULJ7 1429 aa9.27□□□□□ -0.92
USP40-202ENST00000409945 PDE2AO00408 941 aaPredicted RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 TERTO14746 1132 aaKnown RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 PAGE1O75459 146 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 GSTT1P30711 240 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 ZNF157P51786 506 aaPredicted RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 NFX1Q12986 1120 aaKnown RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 CEP135Q66GS9 1140 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 SRA1Q9HD15 236 aaKnown RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 PRDM15P57071 1507 aaPredicted RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 GIPC1O14908 333 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 ARAFP10398 606 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 ADH6P28332 368 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 RASIP1Q5U651 963 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 C8orf86Q6ZUL3 223 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 NUDT8Q8WV74 236 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 SRCIN1Q9C0H9 1055 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 LACRTQ9GZZ8 138 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 SMG9Q9H0W8 520 aaKnown RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 METTL5Q9NRN9 209 aaKnown RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 GGT7Q9UJ14 662 aa9.27□□□□□ -0.93
USP40-202ENST00000409945 TTF2Q9UNY4 1162 aaKnown RBP9.27□□□□□ -0.93
USP40-202ENST00000409945 ABCC3O15438 1527 aa9.26□□□□□ -0.93
USP40-202ENST00000409945 MYO3AQ8NEV4 1616 aa9.26□□□□□ -0.93
USP40-202ENST00000409945 DTHD1Q6ZMT9 781 aa9.26□□□□□ -0.93
USP40-202ENST00000409945 THEMISQ8N1K5 641 aaPredicted RBP9.26□□□□□ -0.93
USP40-202ENST00000409945 TMEM102Q8N9M5 508 aaPredicted RBP9.26□□□□□ -0.93
USP40-202ENST00000409945 ACDQ96AP0 544 aa9.26□□□□□ -0.93
USP40-202ENST00000409945 NLRP1Q9C000 1473 aa9.26□□□□□ -0.93
USP40-202ENST00000409945 CEP170BQ9Y4F5 1589 aaPredicted RBP9.25□□□□□ -0.93
USP40-202ENST00000409945 A0A096LPE4 126 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 A0A1W2PPZ6 126 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 ITPKAP23677 461 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 NEUROD1Q13562 356 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 MAP3K11Q16584 847 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 HGSNATQ68CP4 663 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 ERMP1Q7Z2K6 904 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 SPACA7Q96KW9 195 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 SH2B1Q9NRF2 756 aaPredicted RBP9.25□□□□□ -0.93
USP40-202ENST00000409945 KBTBD4Q9NVX7 518 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 DDX41Q9UJV9 622 aaKnown RBP9.25□□□□□ -0.93
USP40-202ENST00000409945 A2ML1A8K2U0 1454 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 RRBP1Q9P2E9 1410 aaKnown RBP9.25□□□□□ -0.93
USP40-202ENST00000409945 ZNF142P52746 1687 aaPredicted RBP9.25□□□□□ -0.93
USP40-202ENST00000409945 ENC1O14682 589 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 PSAPL1Q6NUJ1 521 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 VN1R5Q7Z5H4 357 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 ZNF576Q9H609 170 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 DEPDC5O75140 1603 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 CAMSAP1Q5T5Y3 1602 aa9.25□□□□□ -0.93
USP40-202ENST00000409945 CEP152O94986 1710 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 ADARB2-AS1A8MUL3 147 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 NAALADL2Q58DX5 795 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 TINF2Q9BSI4 451 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 TRAK1Q9UPV9 953 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 TLR6Q9Y2C9 796 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 ARHGAP31Q2M1Z3 1444 aa9.24□□□□□ -0.93
USP40-202ENST00000409945 GHRHP01286 108 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 ALBP02768 609 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 CDC25BP30305 580 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 ST13P50502 369 aaKnown RBP9.23□□□□□ -0.93
USP40-202ENST00000409945 PTPN12Q05209 780 aaKnown RBP9.23□□□□□ -0.93
USP40-202ENST00000409945 CCDC85BQ15834 202 aaPredicted RBP9.23□□□□□ -0.93
USP40-202ENST00000409945 MROH1Q8NDA8 1641 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 PLA2R1Q13018 1463 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 EPHA1P21709 976 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 GRIK5Q16478 980 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 ZNF423Q2M1K9 1284 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 GDF6Q6KF10 455 aaPredicted RBP9.23□□□□□ -0.93
USP40-202ENST00000409945 TXNDC11Q6PKC3 985 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 USP48Q86UV5 1035 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 AVENQ9NQS1 362 aaPredicted RBP9.23□□□□□ -0.93
USP40-202ENST00000409945 SEC31BQ9NQW1 1179 aa9.23□□□□□ -0.93
USP40-202ENST00000409945 UGGT1Q9NYU2 1555 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 PTPRTO14522 1441 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 ADAMTS2O95450 1211 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 ZC3H6P61129 1189 aaKnown RBP9.22□□□□□ -0.93
USP40-202ENST00000409945 HS2ST1Q7LGA3 356 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 ANKLE2Q86XL3 938 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 NPAS3Q8IXF0 933 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 STK35Q8TDR2 534 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 BCL11AQ9H165 835 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.22□□□□□ -0.93
USP40-202ENST00000409945 ERVK-7P63135 1459 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 SPATA31D1Q6ZQQ2 1576 aa9.22□□□□□ -0.93
USP40-202ENST00000409945 LMTK2Q8IWU2 1503 aa9.21□□□□□ -0.93
USP40-202ENST00000409945 ELOA3CA0A087WX78 387 aaPredicted RBP9.21□□□□□ -0.93
USP40-202ENST00000409945 ELOA3DA6NLF2 546 aaPredicted RBP9.21□□□□□ -0.93
USP40-202ENST00000409945 SHISA8B8ZZ34 492 aa9.21□□□□□ -0.93
USP40-202ENST00000409945 ELOA3BQ3SY89 546 aa9.21□□□□□ -0.93
USP40-202ENST00000409945 ELMSAN1Q6PJG2 1045 aa9.21□□□□□ -0.93
USP40-202ENST00000409945 ELOA3Q8NG57 546 aa9.21□□□□□ -0.93
USP40-202ENST00000409945 SOX13Q9UN79 622 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms