RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 NXPE4Q6UWF7 544 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 LATS2Q9NRM7 1088 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 METTL5Q9NRN9 209 aaKnown RBP7.17□□□□□ -1.26
CLK1-202ENST00000409403 MROH1Q8NDA8 1641 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 A0A1W2PP55 124 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 HSPA6P17066 643 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 KCNA6P17658 529 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 HDLBPQ00341 1268 aaKnown RBP7.16□□□□□ -1.26
CLK1-202ENST00000409403 NFX1Q12986 1120 aaKnown RBP7.16□□□□□ -1.26
CLK1-202ENST00000409403 GRM2Q14416 872 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 EHD4Q9H223 541 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 TRAK1Q9UPV9 953 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 CLIP1P30622 1438 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 TNS2Q63HR2 1409 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 USP17L7P0C7H9 530 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 BMP4P12644 408 aa7.16□□□□□ -1.26
CLK1-202ENST00000409403 ZNF468Q5VIY5 522 aaPredicted RBP7.16□□□□□ -1.26
CLK1-202ENST00000409403 NSUN5Q96P11 429 aaKnown RBP7.16□□□□□ -1.26
CLK1-202ENST00000409403 TET3O43151 1660 aa7.15□□□□□ -1.26
CLK1-202ENST00000409403 MX2P20592 715 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 ZNF76P36508 570 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 GPLD1P80108 840 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 FANCCQ00597 558 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 PCSK7Q16549 785 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 BRINP3Q76B58 766 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 SYT9Q86SS6 491 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 TRPM4Q8TD43 1214 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 SPACA7Q96KW9 195 aa7.15□□□□□ -1.27
CLK1-202ENST00000409403 NXF1Q9UBU9 619 aaKnown RBP7.15□□□□□ -1.27
CLK1-202ENST00000409403 SIN3BO75182 1162 aa7.14□□□□□ -1.27
CLK1-202ENST00000409403 GSTT1P30711 240 aa7.14□□□□□ -1.27
CLK1-202ENST00000409403 CEP120Q8N960 986 aa7.14□□□□□ -1.27
CLK1-202ENST00000409403 GLIS3Q8NEA6 775 aa7.14□□□□□ -1.27
CLK1-202ENST00000409403 RNF34Q969K3 372 aa7.14□□□□□ -1.27
CLK1-202ENST00000409403 IGFLR1Q9H665 355 aa7.14□□□□□ -1.27
CLK1-202ENST00000409403 AVENQ9NQS1 362 aaPredicted RBP7.14□□□□□ -1.27
CLK1-202ENST00000409403 C2CD2LO14523 706 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 TERTO14746 1132 aaKnown RBP7.13□□□□□ -1.27
CLK1-202ENST00000409403 ERCC5P28715 1186 aaPredicted RBP7.13□□□□□ -1.27
CLK1-202ENST00000409403 PRPF40BQ6NWY9 871 aaKnown RBP7.13□□□□□ -1.27
CLK1-202ENST00000409403 NPAS3Q8IXF0 933 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 OSMRQ99650 979 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 ZKSCAN3Q9BRR0 538 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 UBE2OQ9C0C9 1292 aaKnown RBP7.13□□□□□ -1.27
CLK1-202ENST00000409403 LIN7BQ9HAP6 207 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 DZANK1Q9NVP4 752 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 RRBP1Q9P2E9 1410 aaKnown RBP7.13□□□□□ -1.27
CLK1-202ENST00000409403 PIK3C2BO00750 1634 aa7.13□□□□□ -1.27
CLK1-202ENST00000409403 LOC102724428A0A0B4J2F2 783 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 ZBTB42B2RXF5 422 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 SIK1P57059 783 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 PCBP4P57723 403 aaKnown RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 MLLT1Q03111 559 aaPredicted RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 GAS6Q14393 721 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 C9orf131Q5VYM1 1079 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 METTL16Q86W50 562 aaKnown RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 CNTNAP3BQ96NU0 1288 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 CNTNAP3Q9BZ76 1288 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 DNAJB12Q9NXW2 375 aaKnown RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 NSFL1CQ9UNZ2 370 aaKnown RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 CASZ1Q86V15 1759 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 LRRIQ1Q96JM4 1722 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 USP31Q70CQ4 1352 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 ERVK-7P63135 1459 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 COL22A1Q8NFW1 1626 aaPredicted RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 NEFMP07197 916 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 ACPPP15309 386 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 ST13P50502 369 aaKnown RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 TBC1D8BQ0IIM8 1120 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 TAF1CQ15572 869 aaPredicted RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 MEI1Q5TIA1 1274 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 NT5DC4Q86YG4 428 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 CCNJLQ8IV13 435 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 FAM43AQ8N2R8 423 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 C3orf58Q8NDZ4 430 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 DDX17Q92841 729 aaKnown RBP7.12□□□□□ -1.27
CLK1-202ENST00000409403 TCF12Q99081 682 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 ABCB6Q9NP58 842 aa7.12□□□□□ -1.27
CLK1-202ENST00000409403 SPAG9O60271 1321 aaKnown RBP7.11□□□□□ -1.27
CLK1-202ENST00000409403 H3BM21 787 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 GHRHP01286 108 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 XRCC5P13010 732 aaKnown RBP7.11□□□□□ -1.27
CLK1-202ENST00000409403 ADH6P28332 368 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 FCGRTP55899 365 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 DDX10Q13206 875 aaKnown RBP7.11□□□□□ -1.27
CLK1-202ENST00000409403 LCE2CQ5TA81 110 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 HFE2Q6ZVN8 426 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 TNFRSF25Q93038 417 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 SLC26A8Q96RN1 970 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 RBSNQ9H1K0 784 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 SPON1Q9HCB6 807 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 WDR90Q96KV7 1748 aa7.11□□□□□ -1.27
CLK1-202ENST00000409403 ADGRB2O60241 1585 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 PTCH1Q13635 1447 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 TMEM238LA0A1B0GVL6 79 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 J3QW42 95 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 TRPA1O75762 1119 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 ARAFP10398 606 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 MAP2K3P46734 347 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 ZC3H6P61129 1189 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms