RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 AIDAQ96BJ3 306 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 ZBED2Q9BTP6 218 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 NOP58Q9Y2X3 529 aaKnown RBP11.41□□□□□ -0.58
VPS53-203ENST00000401468 PCDHAC2Q9Y5I4 1007 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 TLL2Q9Y6L7 1015 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 ANKRD18BA2A2Z9 1011 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 CCDC85CA6NKD9 419 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 F8W031 263 aaPredicted RBP11.4□□□□□ -0.58
VPS53-203ENST00000401468 CIAO1O76071 339 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 KCNJ4P48050 445 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 IRX6P78412 446 aaPredicted RBP11.4□□□□□ -0.58
VPS53-203ENST00000401468 HDAC1Q13547 482 aaPredicted RBP11.4□□□□□ -0.58
VPS53-203ENST00000401468 SCARF1Q14162 830 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 RSBN1LQ6PCB5 846 aaPredicted RBP11.4□□□□□ -0.58
VPS53-203ENST00000401468 CDC37L1Q7L3B6 337 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 SAPCD2Q86UD0 394 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 MPHOSPH8Q99549 860 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 BSDC1Q9NW68 430 aaPredicted RBP11.4□□□□□ -0.58
VPS53-203ENST00000401468 WBP1LQ9NX94 342 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 FZD1Q9UP38 647 aa11.4□□□□□ -0.58
VPS53-203ENST00000401468 MYO5AQ9Y4I1 1855 aaKnown RBP11.4□□□□□ -0.59
VPS53-203ENST00000401468 ZNF804BA4D1E1 1349 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 USP17L3A6NCW0 530 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 USP17L4A6NCW7 530 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 HSPA8P11142 646 aaKnown RBP11.39□□□□□ -0.59
VPS53-203ENST00000401468 HUNKP57058 714 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 PRKG1Q13976 671 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 NBPF9Q3BBW0 867 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 TYW1BQ6NUM6 668 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 USP17L1Q7RTZ2 530 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 ATG9AQ7Z3C6 839 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 DPF2Q92785 391 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 DCPSQ96C86 337 aaKnown RBP11.39□□□□□ -0.59
VPS53-203ENST00000401468 PUS3Q9BZE2 481 aaKnown RBP11.39□□□□□ -0.59
VPS53-203ENST00000401468 PGAP2Q9UHJ9 254 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 RIPOR2Q9Y4F9 1068 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 MED23Q9ULK4 1368 aa11.39□□□□□ -0.59
VPS53-203ENST00000401468 AOX1Q06278 1338 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 GTF2IP78347 998 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 TAF7LQ5H9L4 462 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 DACT2Q5SW24 774 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 KIAA0825Q8IV33 1275 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 VGLL2Q8N8G2 317 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 KLHDC4Q8TBB5 520 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 CDCA5Q96FF9 252 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 GMLQ99445 158 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 MYOZ2Q9NPC6 264 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 MYH2Q9UKX2 1941 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 PAPPA2Q9BXP8 1791 aa11.38□□□□□ -0.59
VPS53-203ENST00000401468 HMMRO75330 724 aa11.37□□□□□ -0.59
VPS53-203ENST00000401468 USP17L8P0C7I0 530 aa11.37□□□□□ -0.59
VPS53-203ENST00000401468 RPS12P25398 132 aaKnown RBP11.37□□□□□ -0.59
VPS53-203ENST00000401468 DCTPP1Q9H773 170 aa11.37□□□□□ -0.59
VPS53-203ENST00000401468 PLA2G2EQ9NZK7 142 aa11.37□□□□□ -0.59
VPS53-203ENST00000401468 IQSEC3Q9UPP2 1182 aaPredicted RBP11.37□□□□□ -0.59
VPS53-203ENST00000401468 IRS2Q9Y4H2 1338 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 GOLGA8CPA6NN73 597 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 PPP1R3GB7ZBB8 358 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 EYA2O00167 538 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 NEFLP07196 543 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 IL15P40933 162 aaPredicted RBP11.36□□□□□ -0.59
VPS53-203ENST00000401468 TTLL5Q6EMB2 1281 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 LDHAL6AQ6ZMR3 332 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 SULF1Q8IWU6 871 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 CERS5Q8N5B7 392 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 ZC3H15Q8WU90 426 aaKnown RBP11.36□□□□□ -0.59
VPS53-203ENST00000401468 GBA2Q9HCG7 927 aaPredicted RBP11.36□□□□□ -0.59
VPS53-203ENST00000401468 CNNM1Q9NRU3 951 aa11.36□□□□□ -0.59
VPS53-203ENST00000401468 PA2G4Q9UQ80 394 aaKnown RBP11.36□□□□□ -0.59
VPS53-203ENST00000401468 MROH5Q6ZUA9 1318 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 BHMG1C9JSJ3 638 aaPredicted RBP11.35□□□□□ -0.59
VPS53-203ENST00000401468 ECE1P42892 770 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 GYG1P46976 350 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 ZNF280AP59817 542 aaPredicted RBP11.35□□□□□ -0.59
VPS53-203ENST00000401468 LRRC24Q50LG9 513 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 SMC5Q8IY18 1101 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 AGBL3Q8NEM8 1001 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 NBPF3Q9H094 633 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 ZSWIM8A7E2V4 1837 aa11.35□□□□□ -0.59
VPS53-203ENST00000401468 UBE2Q2LH0YL09 131 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 IGHDP01880 384 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 FGFR2P21802 821 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 ZNF157P51786 506 aaPredicted RBP11.34□□□□□ -0.59
VPS53-203ENST00000401468 PTPN5P54829 565 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 TTLL12Q14166 644 aaPredicted RBP11.34□□□□□ -0.59
VPS53-203ENST00000401468 HSP90AB4PQ58FF6 505 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 C15orf52Q6ZUT6 534 aaKnown RBP11.34□□□□□ -0.59
VPS53-203ENST00000401468 PODNQ7Z5L7 613 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 ANKRD2Q9GZV1 360 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 COA1Q9GZY4 146 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 CD209Q9NNX6 404 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 GPR108Q9NPR9 543 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 LEMD3Q9Y2U8 911 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 ZNF609O15014 1411 aa11.34□□□□□ -0.59
VPS53-203ENST00000401468 CLRN2A0PK11 232 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 FAM155AB1AL88 458 aaPredicted RBP11.33□□□□□ -0.6
VPS53-203ENST00000401468 WNT10BO00744 389 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 RAB11FIP3O75154 756 aa11.33□□□□□ -0.6
VPS53-203ENST00000401468 SURF6O75683 361 aaKnown RBP11.33□□□□□ -0.6
VPS53-203ENST00000401468 PDE8BO95263 885 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms