RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 VCXQ9H320 206 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 SPDYE3A6NKU9 549 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 PLCD1P51178 756 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 PLCB3Q01970 1234 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 ZNF365Q70YC5 407 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 MLKLQ8NB16 471 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 NAP1L4Q99733 375 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 TSPYL2Q9H2G4 693 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 CBX8Q9HC52 389 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 TMEM110-MUSTN1A8MSY1 372 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 SH3BGRP55822 239 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 TBC1D8BQ0IIM8 1120 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 KRT24Q2M2I5 525 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 CYP26C1Q6V0L0 522 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 CADPS2Q86UW7 1296 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 CACNA2D3Q8IZS8 1091 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 WHAMMQ8TF30 809 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 NPATQ14207 1427 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 NPC1L1Q9UHC9 1359 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 SLC27A2O14975 620 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 ADAMTS2O95450 1211 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 CPA1P15085 419 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 CHRNA2Q15822 529 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 PHACTR3Q96KR7 559 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 SPATS2LQ9NUQ6 558 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 KCNH3Q9ULD8 1083 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 SNX14Q9Y5W7 946 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 ARHGEF12Q9NZN5 1544 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 ATP2A2P16615 1042 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 ATP11AP98196 1134 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 MAGEB6Q8N7X4 407 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 PABPN1LA6NDY0 278 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 PER1O15534 1290 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 SGSM2O43147 1006 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 ARHGAP6O43182 974 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 RFC4P35249 363 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 ST5P78524 1137 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 CCDC65Q8IXS2 484 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 CARD6Q9BX69 1037 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 VWA3AA6NCI4 1184 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 SMIM23A6NLE4 172 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 CUTAO60888 179 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 DEXIO95424 95 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 CCT6AP40227 531 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 MAP3K9P80192 1104 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 PPP1R7Q15435 360 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 DDX27Q96GQ7 796 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 ATP5DP30049 168 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 GJC1P36383 396 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 C8orf74Q6P047 294 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 LEO1Q8WVC0 666 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 NOC4LQ9BVI4 516 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 CARD14Q9BXL6 1004 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 BABAM1Q9NWV8 329 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 SV2BQ7L1I2 683 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 BICC1Q9H694 974 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 KCNK9Q9NPC2 374 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 MCM9Q9NXL9 1143 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 NKIRAS1Q9NYS0 192 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 ZRANB1Q9UGI0 708 aa11.49□□□□□ -0.57
LIMCH1-203ENST00000396595 TNRQ92752 1358 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 SEL1L2Q5TEA6 688 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 ZNF804AQ7Z570 1209 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 MSANTD4Q8NCY6 345 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 UBLCP1Q8WVY7 318 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 DDX21Q9NR30 783 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 RXRAP19793 462 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 CCDC25Q86WR0 208 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 CCDC63Q8NA47 563 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 IFT74Q96LB3 600 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 LMBRD1Q9NUN5 540 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 CTNND2Q9UQB3 1225 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 URB2Q14146 1524 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 NDUFAB1O14561 156 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 TMTC1Q8IUR5 882 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 RAB3IL1Q8TBN0 382 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 KIAA1524Q8TCG1 905 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 SETDB2Q96T68 719 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 ALDH3A1P30838 453 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 ELF2Q15723 593 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 NUP58Q9BVL2 599 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 PPP1R12CQ9BZL4 782 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 ITSN2Q9NZM3 1697 aa11.48□□□□□ -0.57
LIMCH1-203ENST00000396595 GBP1P32455 592 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 NLRP12P59046 1061 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 INTS8Q75QN2 995 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 MIGA1Q8NAN2 632 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 SSX2IPQ9Y2D8 614 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 INSRP06213 1382 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 ZMYM4Q5VZL5 1548 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 TRAF5O00463 557 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 GIGYF1O75420 1035 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 TSNAXIP1Q2TAA8 658 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 OTUD7AQ8TE49 926 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 VPS16Q9H269 839 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 SYNRGQ9UMZ2 1314 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 ZNF174Q15697 407 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 CROCCP2Q86T23 111 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 NIP7Q9Y221 180 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 IRS4O14654 1257 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms