RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TOGARAM2Q6ZUX3 1019 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 SIL1Q9H173 461 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 PLEKHA4Q9H4M7 779 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 ABCC6O95255 1503 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 JCADQ9P266 1359 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 TMEM232C9JQI7 657 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 SERPINC1P01008 464 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 HSP90B1P14625 803 aaKnown RBP16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 KRT32Q14532 448 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 BAG1Q99933 345 aaPredicted RBP16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 DBF4Q9UBU7 674 aaPredicted RBP16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 CFAP100Q494V2 611 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 TOM1L2Q6ZVM7 507 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 NEK1Q96PY6 1258 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 RTEL1Q9NZ71 1219 aa16.81■□□□□ 0.28
VPS9D1-201ENST00000389386 NHSL1Q5SYE7 1610 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 PFKFB2O60825 505 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 CTDNEP1O95476 244 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 EIF5P55010 431 aaKnown RBP16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 CASP8Q14790 479 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 HSP90B2PQ58FF3 399 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 USPL1Q5W0Q7 1092 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 MICALL1Q8N3F8 863 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 CCDC12Q8WUD4 166 aaPredicted RBP16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 KDM3BQ7LBC6 1761 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 PHACTR2O75167 634 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 PTPN21Q16825 1174 aa16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 ZNF589Q86UQ0 364 aaPredicted RBP16.8■□□□□ 0.28
VPS9D1-201ENST00000389386 LMO7Q8WWI1 1683 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 NUTM2BA6NNL0 878 aaPredicted RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 NUTM2EB1AL46 878 aaPredicted RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 STX10O60499 249 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 ADAMTS2O95450 1211 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 MAP2K2P36507 400 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 TBX2Q13207 712 aaPredicted RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 NUTM2AQ8IVF1 878 aaPredicted RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 CCDC102AQ96A19 550 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 FAM204AQ9H8W3 233 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 C9orf78Q9NZ63 289 aaPredicted RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 PA2G4Q9UQ80 394 aaKnown RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 COL18A1P39060 1754 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 TOM1O60784 492 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 TAF5LO75529 589 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 ALDH1L1O75891 902 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 ANKRD20A12PQ8NF67 263 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 KAT2BQ92831 832 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 CARD10Q9BWT7 1032 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 MED4Q9NPJ6 270 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 PUF60Q9UHX1 559 aaKnown RBP16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 CAMTA1Q9Y6Y1 1673 aa16.79■□□□□ 0.28
VPS9D1-201ENST00000389386 WDHD1O75717 1129 aaPredicted RBP16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 EVA1CP58658 441 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 AACSQ86V21 672 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 PTPDC1A2A3K4 754 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 ZNF202O95125 648 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 TATP17735 454 aaPredicted RBP16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 ATP6V1AP38606 617 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 KARSQ15046 597 aaKnown RBP16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 ISM2Q6H9L7 571 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 CEP112Q8N8E3 955 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 LINC00301Q8NCQ3 95 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 INTS13Q9NVM9 706 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 CDC23Q9UJX2 597 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 CPDO75976 1380 aa16.78■□□□□ 0.28
VPS9D1-201ENST00000389386 HOXB7P09629 217 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 MYL5Q02045 173 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 IRX2Q9BZI1 471 aaPredicted RBP16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 FAM107BQ9H098 131 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 BTG4Q9NY30 223 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 KIF1CO43896 1103 aaKnown RBP16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 GUCY1B3Q02153 619 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 MTX1Q13505 466 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 ZNF790Q6PG37 636 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 FSD1Q9BTV5 496 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 SUFUQ9UMX1 484 aa16.77■□□□□ 0.28
VPS9D1-201ENST00000389386 MEGF6O75095 1541 aa16.77■□□□□ 0.27
VPS9D1-201ENST00000389386 CCDC196A0A1B0GTZ2 297 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 VSNL1P62760 191 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 TUBB4BP68371 445 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 TC2NQ8N9U0 490 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 SEC62Q99442 399 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 LRRC2Q9BYS8 371 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 EXOC5O00471 708 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 ERLIN2O94905 339 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 PHKG2P15735 406 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 HNRNPH1P31943 449 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 ZNF496Q96IT1 587 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 MRPL44Q9H9J2 332 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 LRRIQ3A6PVS8 624 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 CYP27B1O15528 508 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 SF3A1Q15459 793 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 DESI2Q9BSY9 194 aa16.76■□□□□ 0.27
VPS9D1-201ENST00000389386 STK38Q15208 465 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 KSR2Q6VAB6 950 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 GBP3Q9H0R5 595 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 SLC52A2Q9HAB3 445 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 CLIC4Q9Y696 253 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 KDM6AO15550 1401 aaPredicted RBP16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 MYO1BO43795 1136 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms