RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 USP17L12C9JPN9 530 aa15.05■□□□□ -0
NPHP4-203ENST00000378169 USP17L21D6R901 530 aa15.05■□□□□ -0
NPHP4-203ENST00000378169 PPP1R12BO60237 982 aaPredicted RBP15.05■□□□□ -0
NPHP4-203ENST00000378169 TRIM21P19474 475 aaKnown RBP15.05■□□□□ -0
NPHP4-203ENST00000378169 PIGBQ92521 554 aa15.05■□□□□ -0
NPHP4-203ENST00000378169 CENPHQ9H3R5 247 aa15.05■□□□□ -0
NPHP4-203ENST00000378169 EXOC1Q9NV70 894 aa15.05■□□□□ -0
NPHP4-203ENST00000378169 PPRC1Q5VV67 1664 aaKnown RBP15.05■□□□□ -0
NPHP4-203ENST00000378169 SLFNL1Q499Z3 407 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 AKNAD1Q5T1N1 836 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 SEC31BQ9NQW1 1179 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 DEXIO95424 95 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 RILPL1Q5EBL4 403 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 OGFOD1Q8N543 542 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 CCDC102AQ96A19 550 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 USP21Q9UK80 565 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 FAM47AQ5JRC9 791 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 PRDM10Q9NQV6 1147 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 SAMM50Q9Y512 469 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 ANKARQ7Z5J8 1434 aa15.04■□□□□ -0
NPHP4-203ENST00000378169 CRKLP46109 303 aaKnown RBP15.03■□□□□ -0
NPHP4-203ENST00000378169 CLSTN2Q9H4D0 955 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 CBX8Q9HC52 389 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 KCNH3Q9ULD8 1083 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 POLR2DO15514 142 aaKnown RBP15.03■□□□□ -0
NPHP4-203ENST00000378169 PLCG2P16885 1265 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 MATR3P43243 847 aaKnown RBP eCLIP15.03■□□□□ -02e-6■■■■□ 26.1
NPHP4-203ENST00000378169 LETM2Q2VYF4 491 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 ATL3Q6DD88 541 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 PIK3AP1Q6ZUJ8 805 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 PYM1Q9BRP8 204 aaKnown RBP15.03■□□□□ -0
NPHP4-203ENST00000378169 VEZTQ9HBM0 779 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 C6orf50Q9HD87 102 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 QRICH2Q9H0J4 1663 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 ARHGEF40Q8TER5 1519 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 LARGE1O95461 756 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 MAPKAPK5Q8IW41 473 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 RNF216Q9NWF9 866 aaPredicted RBP15.03■□□□□ -0
NPHP4-203ENST00000378169 MAPK8IP1Q9UQF2 711 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 RGS12O14924 1447 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 SNAP23O00161 211 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 ZNF202O95125 648 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 TNIP1Q15025 636 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 IFNL3Q8IZI9 196 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 STAMQ92783 540 aa15.03■□□□□ -0
NPHP4-203ENST00000378169 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.03■□□□□ -0
NPHP4-203ENST00000378169 NR1I2O75469 434 aa15.02■□□□□ -0
NPHP4-203ENST00000378169 FGFR1OPO95684 399 aaKnown RBP15.02■□□□□ -0
NPHP4-203ENST00000378169 VPS54Q9P1Q0 977 aa15.02■□□□□ -0
NPHP4-203ENST00000378169 PATL2C9JE40 543 aaKnown RBP15.02□□□□□ -0.01
NPHP4-203ENST00000378169 DTHD1Q6ZMT9 781 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 SYNE4Q8N205 404 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 RRP36Q96EU6 259 aaKnown RBP15.02□□□□□ -0.01
NPHP4-203ENST00000378169 PRM3Q9NNZ6 103 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 HEG1Q9ULI3 1381 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 PSMA7O14818 248 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 CHMP4BP1P59074 171 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 CHRNDQ07001 517 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 MYSM1Q5VVJ2 828 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 TXLNBQ8N3L3 684 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 IQUBQ8NA54 791 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 PARP3Q9Y6F1 533 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 ELP1O95163 1332 aa15.02□□□□□ -0.01
NPHP4-203ENST00000378169 SCRN1Q12765 414 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 HS1BP3Q53T59 392 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 RBM26Q5T8P6 1007 aaKnown RBP15.01□□□□□ -0.01
NPHP4-203ENST00000378169 RMND1Q9NWS8 449 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 GGA1Q9UJY5 639 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 PTPRMP28827 1452 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 SPDYE4A6NLX3 237 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 TAF4BQ92750 862 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 PRIMPOLQ96LW4 560 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 GPCPD1Q9NPB8 672 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 MAST3O60307 1309 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 AKR1B10O60218 316 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 MYL5Q02045 173 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 USPL1Q5W0Q7 1092 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 SPATA31A3Q5VYP0 1347 aa15.01□□□□□ -0.01
NPHP4-203ENST00000378169 LMTK2Q8IWU2 1503 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 ZMYM1Q5SVZ6 1142 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 NLRP10Q86W26 655 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 OSBP2Q969R2 916 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 MYO1BO43795 1136 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 KIF20AO95235 890 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 CDR1P51861 262 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 TFAP4Q01664 338 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 TGFBRAP1Q8WUH2 860 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 ZNF274Q96GC6 653 aaPredicted RBP15□□□□□ -0.01
NPHP4-203ENST00000378169 MMRN2Q9H8L6 949 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 PDIA3P30101 505 aaKnown RBP15□□□□□ -0.01
NPHP4-203ENST00000378169 IL6STP40189 918 aaPredicted RBP15□□□□□ -0.01
NPHP4-203ENST00000378169 CUL4AQ13619 759 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 WDR66Q8TBY9 1149 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 UIMC1Q96RL1 719 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 PFKFB2O60825 505 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 GNA11P29992 359 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 PPARAQ07869 468 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 ZNF654Q8IZM8 581 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 ZBTB9Q96C00 473 aa15□□□□□ -0.01
NPHP4-203ENST00000378169 PARP1P09874 1014 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms