RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 HDAC1Q13547 482 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-204ENST00000369530 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.32□□□□□ -1.08
CSDE1-204ENST00000369530 TRIM44Q96DX7 344 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-204ENST00000369530 IL17RAQ96F46 866 aa8.32□□□□□ -1.08
CSDE1-204ENST00000369530 ARID3AQ99856 593 aa8.32□□□□□ -1.08
CSDE1-204ENST00000369530 DNAJC18Q9H819 358 aa8.32□□□□□ -1.08
CSDE1-204ENST00000369530 SAGE1Q9NXZ1 904 aa8.32□□□□□ -1.08
CSDE1-204ENST00000369530 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.32□□□□□ -1.08
CSDE1-204ENST00000369530 GGA1Q9UJY5 639 aa8.32□□□□□ -1.08
CSDE1-204ENST00000369530 LRRFIP2Q9Y608 721 aaKnown RBP8.32□□□□□ -1.08
CSDE1-204ENST00000369530 USP17L3A6NCW0 530 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 USP17L4A6NCW7 530 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 DDX11L8A8MPP1 907 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 GABPAQ06546 454 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 RRP1BQ14684 758 aaKnown RBP8.31□□□□□ -1.08
CSDE1-204ENST00000369530 USP17L1Q7RTZ2 530 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 TAOK2Q9UL54 1235 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 TACC3Q9Y6A5 838 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 XIRP2A4UGR9 3374 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 UQCRHLA0A096LP55 91 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 TRAK2O60296 914 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 MAP4K4O95819 1239 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-204ENST00000369530 UQCRHP07919 91 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 HSP90B1P14625 803 aaKnown RBP8.31□□□□□ -1.08
CSDE1-204ENST00000369530 MCAMP43121 646 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 FKBP5Q13451 457 aaPredicted RBP8.31□□□□□ -1.08
CSDE1-204ENST00000369530 RIOK1Q9BRS2 568 aaKnown RBP8.31□□□□□ -1.08
CSDE1-204ENST00000369530 OSBPL3Q9H4L5 887 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 STAP2Q9UGK3 403 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 GPR75-ASB3A0A0A6YYF3 556 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 CLGNO14967 610 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 TPRNQ4KMQ1 711 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 DCTPP1Q9H773 170 aa8.31□□□□□ -1.08
CSDE1-204ENST00000369530 DLK2Q6UY11 383 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 RASAL3Q86YV0 1011 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 CDAN1Q8IWY9 1227 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 LPIN2Q92539 896 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 DBNLQ9UJU6 430 aaKnown RBP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 PCDHB15Q9Y5E8 787 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 MYH15Q9Y2K3 1946 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 RAD50Q92878 1312 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 WDHD1O75717 1129 aaPredicted RBP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 ADORA1P30542 326 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 FKBP1BP68106 108 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 PUM3Q15397 648 aaKnown RBP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 CIAPIN1Q6FI81 312 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 CLEC17AQ6ZS10 378 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 FAM83AQ86UY5 434 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 ZNF622Q969S3 477 aaKnown RBP eCLIP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 TLR7Q9NYK1 1049 aaKnown RBP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 IRX5P78411 483 aaPredicted RBP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 NSUN4Q96CB9 384 aaKnown RBP8.3□□□□□ -1.08
CSDE1-204ENST00000369530 STK31Q9BXU1 1019 aa8.3□□□□□ -1.08
CSDE1-204ENST00000369530 ANKRD18BA2A2Z9 1011 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 USP2O75604 605 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-204ENST00000369530 MYRIPQ8NFW9 859 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 ZBTB12Q9Y330 459 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-204ENST00000369530 IQCA1LA6NCM1 817 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 JAG1P78504 1218 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 RASGRF1Q13972 1273 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 NBPF9Q3BBW0 867 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 TSPYL1Q9H0U9 437 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 FAM13BQ9NYF5 915 aa8.29□□□□□ -1.08
CSDE1-204ENST00000369530 CNOT7Q9UIV1 285 aaKnown RBP8.29□□□□□ -1.08
CSDE1-204ENST00000369530 IL15P40933 162 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 UBE2Q1Q7Z7E8 422 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 MICALL2Q8IY33 904 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 EAF2Q96CJ1 260 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 ZIC5Q96T25 663 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 CHD9Q3L8U1 2897 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 TRANK1O15050 2925 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 CYP2E1P05181 493 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 GABPB1Q06547 395 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 DBNDD1Q9H9R9 158 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 LAMA2P24043 3122 aaKnown RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 TAF5LO75529 589 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 TNIP1Q15025 636 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 SKOR2Q2VWA4 1001 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 SMC5Q8IY18 1101 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 PRMT6Q96LA8 375 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-204ENST00000369530 KCNH4Q9UQ05 1017 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 COG6Q9Y2V7 657 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 ZMYM6O95789 1325 aa8.28□□□□□ -1.08
CSDE1-204ENST00000369530 IGKV6D-41A0A0C4DH26 115 aa8.27□□□□□ -1.08
CSDE1-204ENST00000369530 TATDN1Q6P1N9 297 aa8.27□□□□□ -1.08
CSDE1-204ENST00000369530 DHX37Q8IY37 1157 aaKnown RBP8.27□□□□□ -1.08
CSDE1-204ENST00000369530 HMG20BQ9P0W2 317 aa8.27□□□□□ -1.08
CSDE1-204ENST00000369530 SMCHD1A6NHR9 2005 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 PPIP5K2O43314 1243 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 TNNI3KQ59H18 835 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 ZKSCAN2Q63HK3 967 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 CNTROBQ8N137 903 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 ZNF710Q8N1W2 664 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 EYA3Q99504 573 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 GPBP1L1Q9HC44 474 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-204ENST00000369530 DDX4Q9NQI0 724 aaKnown RBP8.27□□□□□ -1.09
CSDE1-204ENST00000369530 FPGT-TNNI3KV9GXZ4 949 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 TRAF5O00463 557 aa8.27□□□□□ -1.09
CSDE1-204ENST00000369530 UFL1O94874 794 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms