RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 UNCXA6NJT0 531 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 GRIK5Q16478 980 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 CAVIN4Q5BKX8 364 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 CDAN1Q8IWY9 1227 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 DZIP1LQ8IYY4 767 aaKnown RBP13□□□□□ -0.33
CLRN3-201ENST00000368671 KLHDC4Q8TBB5 520 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 TRIM17Q9Y577 477 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 MYH13Q9UKX3 1938 aa13□□□□□ -0.33
CLRN3-201ENST00000368671 PTPRCP08575 1304 aa12.99□□□□□ -0.33
CLRN3-201ENST00000368671 TNNI2P48788 182 aa12.99□□□□□ -0.33
CLRN3-201ENST00000368671 OTUD7BQ6GQQ9 843 aa12.99□□□□□ -0.33
CLRN3-201ENST00000368671 FBXO33Q7Z6M2 555 aa12.99□□□□□ -0.33
CLRN3-201ENST00000368671 OPTNQ96CV9 577 aa12.99□□□□□ -0.33
CLRN3-201ENST00000368671 TMEM39BQ9GZU3 492 aa12.99□□□□□ -0.33
CLRN3-201ENST00000368671 PDE8BO95263 885 aa12.98□□□□□ -0.33
CLRN3-201ENST00000368671 CACNB3P54284 484 aa12.98□□□□□ -0.33
CLRN3-201ENST00000368671 TBC1D22AQ8WUA7 517 aa12.98□□□□□ -0.33
CLRN3-201ENST00000368671 SSH1Q8WYL5 1049 aa12.98□□□□□ -0.33
CLRN3-201ENST00000368671 TEPSINQ96N21 525 aa12.98□□□□□ -0.33
CLRN3-201ENST00000368671 E9PSI1 815 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 BCAMP50895 628 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 CRHR2Q13324 411 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 OTOP1Q7RTM1 612 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 VGLL2Q8N8G2 317 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 CD99L2Q8TCZ2 262 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 TEKT1Q969V4 418 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 ERO1AQ96HE7 468 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 PTPN18Q99952 460 aa12.97□□□□□ -0.33
CLRN3-201ENST00000368671 TESPA1A2RU30 521 aaPredicted RBP12.96□□□□□ -0.33
CLRN3-201ENST00000368671 IFIT1P09914 478 aaKnown RBP12.96□□□□□ -0.33
CLRN3-201ENST00000368671 VGLL4Q14135 290 aa12.96□□□□□ -0.33
CLRN3-201ENST00000368671 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.96□□□□□ -0.33
CLRN3-201ENST00000368671 USP44Q9H0E7 712 aa12.96□□□□□ -0.33
CLRN3-201ENST00000368671 TMOD2Q9NZR1 351 aa12.96□□□□□ -0.33
CLRN3-201ENST00000368671 CSADQ9Y600 493 aa12.96□□□□□ -0.33
CLRN3-201ENST00000368671 MAP3K9P80192 1104 aa12.95□□□□□ -0.34
CLRN3-201ENST00000368671 HDLBPQ00341 1268 aaKnown RBP12.95□□□□□ -0.34
CLRN3-201ENST00000368671 SLFN5Q08AF3 891 aa12.95□□□□□ -0.34
CLRN3-201ENST00000368671 PUM3Q15397 648 aaKnown RBP12.95□□□□□ -0.34
CLRN3-201ENST00000368671 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLRN3-201ENST00000368671 OTUD5Q96G74 571 aa12.95□□□□□ -0.34
CLRN3-201ENST00000368671 MAST3O60307 1309 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 CCL15-CCL14A0A0B4J2E2 113 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 EYA2O00167 538 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 SLC5A1P13866 664 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 FGFR2P21802 821 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 RFX5P48382 616 aaPredicted RBP12.94□□□□□ -0.34
CLRN3-201ENST00000368671 SP3Q02447 781 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 CCL15Q16663 113 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 PRPF38BQ5VTL8 546 aaKnown RBP12.94□□□□□ -0.34
CLRN3-201ENST00000368671 BRI3BPQ8WY22 251 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 CDCA7LQ96GN5 454 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 MS4A4AQ96JQ5 239 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 ZDHHC15Q96MV8 337 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 SMC4Q9NTJ3 1288 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 PTPN22Q9Y2R2 807 aa12.94□□□□□ -0.34
CLRN3-201ENST00000368671 GTF2A2P52657 109 aa12.93□□□□□ -0.34
CLRN3-201ENST00000368671 TAF1CQ15572 869 aaPredicted RBP12.93□□□□□ -0.34
CLRN3-201ENST00000368671 ALDH1L2Q3SY69 923 aa12.93□□□□□ -0.34
CLRN3-201ENST00000368671 WRNIP1Q96S55 665 aa12.93□□□□□ -0.34
CLRN3-201ENST00000368671 EFCC1Q9HA90 598 aa12.93□□□□□ -0.34
CLRN3-201ENST00000368671 KIF16BQ96L93 1317 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 RBBP6Q7Z6E9 1792 aaKnown RBP12.92□□□□□ -0.34
CLRN3-201ENST00000368671 CAP1Q01518 475 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 APOBEC3HQ6NTF7 200 aaKnown RBP12.92□□□□□ -0.34
CLRN3-201ENST00000368671 FAM43AQ8N2R8 423 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 LPIN2Q92539 896 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 ZKSCAN4Q969J2 545 aaPredicted RBP12.92□□□□□ -0.34
CLRN3-201ENST00000368671 SIL1Q9H173 461 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 ZFYVE28Q9HCC9 887 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 SUGT1Q9Y2Z0 365 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 SNCAIPQ9Y6H5 919 aa12.92□□□□□ -0.34
CLRN3-201ENST00000368671 ZSWIM8A7E2V4 1837 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 SPDYE5A6NIY4 337 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 UBTFL1P0CB47 393 aaPredicted RBP12.91□□□□□ -0.34
CLRN3-201ENST00000368671 INTS3Q68E01 1043 aaKnown RBP12.91□□□□□ -0.34
CLRN3-201ENST00000368671 HHIPL2Q6UWX4 724 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 ATG9AQ7Z3C6 839 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 FAM83AQ86UY5 434 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 FBXO22Q8NEZ5 403 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 WDR66Q8TBY9 1149 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 HOOK2Q96ED9 719 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 MRIQ9BWK5 157 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 MFRPQ9BY79 579 aa12.91□□□□□ -0.34
CLRN3-201ENST00000368671 TNRC18O15417 2968 aaPredicted RBP12.91□□□□□ -0.34
CLRN3-201ENST00000368671 AK9Q5TCS8 1911 aa12.9□□□□□ -0.34
CLRN3-201ENST00000368671 ATP2B3Q16720 1220 aa12.9□□□□□ -0.34
CLRN3-201ENST00000368671 DCAF15Q66K64 600 aa12.9□□□□□ -0.34
CLRN3-201ENST00000368671 MIGA2Q7L4E1 593 aa12.9□□□□□ -0.34
CLRN3-201ENST00000368671 ERO1BQ86YB8 467 aa12.9□□□□□ -0.34
CLRN3-201ENST00000368671 ZNF341Q9BYN7 854 aa12.9□□□□□ -0.34
CLRN3-201ENST00000368671 NOB1Q9ULX3 412 aaKnown RBP12.9□□□□□ -0.34
CLRN3-201ENST00000368671 RPAP1Q9BWH6 1393 aaPredicted RBP12.9□□□□□ -0.34
CLRN3-201ENST00000368671 WDHD1O75717 1129 aaPredicted RBP12.89□□□□□ -0.35
CLRN3-201ENST00000368671 CETPP11597 493 aa12.89□□□□□ -0.35
CLRN3-201ENST00000368671 PRDX5P30044 214 aa12.89□□□□□ -0.35
CLRN3-201ENST00000368671 TCP10Q12799 353 aa12.89□□□□□ -0.35
CLRN3-201ENST00000368671 DIXDC1Q155Q3 683 aa12.89□□□□□ -0.35
CLRN3-201ENST00000368671 FKBP1CQ5VVH2 108 aa12.89□□□□□ -0.35
CLRN3-201ENST00000368671 CEP126Q9P2H0 1117 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms