RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 BCAP29Q9UHQ4 241 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 LUC7L2Q9Y383 392 aaKnown RBP10.02□□□□□ -0.81
SYNE1-209ENST00000367257 RILPL1Q5EBL4 403 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 ACTN4O43707 911 aaKnown RBP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 PRIM1P49642 420 aaKnown RBP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 CCT2P78371 535 aaKnown RBP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 CACNA2D3Q8IZS8 1091 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 MRPL50Q8N5N7 158 aaKnown RBP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 BRF1Q92994 677 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 CCDC51Q96ER9 411 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 RRP15Q9Y3B9 282 aaKnown RBP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 DKC1O60832 514 aaKnown RBP eCLIP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 NEDD9Q14511 834 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 ATRIPQ8WXE1 791 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 YY1AP1Q9H869 796 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 IRAK4Q9NWZ3 460 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 ZNF142P52746 1687 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-209ENST00000367257 MACROD2A1Z1Q3 448 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 CIB2O75838 187 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 FAM160A1Q05DH4 1040 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 AKAP4Q5JQC9 854 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 LINS1Q8NG48 757 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 PLCB1Q9NQ66 1216 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 COMMD10Q9Y6G5 202 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 FANCAO15360 1455 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 MAP7D1Q3KQU3 841 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 SEL1L2Q5TEA6 688 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 MICAL1Q8TDZ2 1067 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 NYXQ9GZU5 481 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 DACT1Q9NYF0 836 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 NKIRAS1Q9NYS0 192 aa10.01□□□□□ -0.81
SYNE1-209ENST00000367257 CCDC184Q52MB2 194 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 ANKRD13DQ6ZTN6 518 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 DHX32Q7L7V1 743 aaKnown RBP10□□□□□ -0.81
SYNE1-209ENST00000367257 MICU3Q86XE3 530 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 AFAP1L2Q8N4X5 818 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 AOPEPQ8N6M6 819 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 TMEM87BQ96K49 555 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 TFIP11Q9UBB9 837 aaKnown RBP10□□□□□ -0.81
SYNE1-209ENST00000367257 AKR1B15C9JRZ8 316 aaPredicted RBP10□□□□□ -0.81
SYNE1-209ENST00000367257 RNF113AO15541 343 aaKnown RBP10□□□□□ -0.81
SYNE1-209ENST00000367257 LRRC23Q53EV4 343 aaPredicted RBP10□□□□□ -0.81
SYNE1-209ENST00000367257 KIFAP3Q92845 792 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 SYNMO15061 1565 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 NOS1P29475 1434 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 SSH2Q76I76 1423 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 MXRA7P84157 204 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 CPLX4Q7Z7G2 160 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 PPP1R9BQ96SB3 815 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 PREX1Q8TCU6 1659 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 GRM8O00222 908 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 PPFIA3O75145 1194 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 ASIC1P78348 528 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 GUCY1B3Q02153 619 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 ATP2B3Q16720 1220 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 C20orf194Q5TEA3 1177 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 FYB2Q5VWT5 728 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 GIMAP6Q6P9H5 292 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 RRP36Q96EU6 259 aaKnown RBP10□□□□□ -0.81
SYNE1-209ENST00000367257 VCXQ9H320 206 aa10□□□□□ -0.81
SYNE1-209ENST00000367257 CCDC160A6NGH7 325 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 BIN1O00499 593 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 ZNF445P59923 1031 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 ZBTB16Q05516 673 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 CYP26C1Q6V0L0 522 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 MLKLQ8NB16 471 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 AFAP1L1Q8TED9 768 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 TSPY3P0CV98 308 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 TSPY8P0CW00 308 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 OAS2P29728 719 aaKnown RBP9.99□□□□□ -0.81
SYNE1-209ENST00000367257 IRX4P78413 519 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 ST5P78524 1137 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 ATP11AP98196 1134 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 NBPF6Q5VWK0 638 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 RUFY3Q7L099 469 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 TAOK1Q7L7X3 1001 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 NBPF5PQ86XG9 351 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-209ENST00000367257 CCDC65Q8IXS2 484 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 NBPF4Q96M43 638 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 ANKRD2Q9GZV1 360 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 EFCAB6Q5THR3 1501 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 PPLO60437 1756 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 PLA2R1Q13018 1463 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 TRPM2O94759 1503 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 PPFIA4O75335 1185 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 GBP1P32455 592 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 NCBP1Q09161 790 aaKnown RBP9.99□□□□□ -0.81
SYNE1-209ENST00000367257 E2F4Q16254 413 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 NAPGQ99747 312 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-209ENST00000367257 SH2D4AQ9H788 454 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 SYNCQ9H7C4 482 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 HAUS2Q9NVX0 235 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 PARP2Q9UGN5 583 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 DMRT2Q9Y5R5 561 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 MSH6P52701 1360 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 EXOC5O00471 708 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 ZNF365Q70YC5 407 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 TMTC1Q8IUR5 882 aa9.99□□□□□ -0.81
SYNE1-209ENST00000367257 TRIM37O94972 964 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 GAS8O95995 478 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms