RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TAF6LQ9Y6J9 622 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 PSME4Q14997 1843 aa23.74■■□□□ 1.39
CLN3-205ENST00000359984 BTDP43251 543 aa23.74■■□□□ 1.39
CLN3-205ENST00000359984 NOL10Q9BSC4 688 aaKnown RBP23.74■■□□□ 1.39
CLN3-205ENST00000359984 RPAP1Q9BWH6 1393 aaPredicted RBP23.73■■□□□ 1.39
CLN3-205ENST00000359984 CYP21A2P08686 494 aa23.73■■□□□ 1.39
CLN3-205ENST00000359984 ZKSCAN1P17029 563 aaPredicted RBP23.73■■□□□ 1.39
CLN3-205ENST00000359984 SDR42E1Q8WUS8 393 aa23.73■■□□□ 1.39
CLN3-205ENST00000359984 GMLQ99445 158 aa23.73■■□□□ 1.39
CLN3-205ENST00000359984 MRIQ9BWK5 157 aa23.73■■□□□ 1.39
CLN3-205ENST00000359984 MYO3BQ8WXR4 1341 aa23.73■■□□□ 1.39
CLN3-205ENST00000359984 HHIPL2Q6UWX4 724 aa23.73■■□□□ 1.39
CLN3-205ENST00000359984 SH3RF3Q8TEJ3 882 aaPredicted RBP23.73■■□□□ 1.39
CLN3-205ENST00000359984 CRNKL1Q9BZJ0 848 aaKnown RBP23.73■■□□□ 1.39
CLN3-205ENST00000359984 TSGA10IPQ3SY00 556 aa23.72■■□□□ 1.39
CLN3-205ENST00000359984 CIAPIN1Q6FI81 312 aa23.72■■□□□ 1.39
CLN3-205ENST00000359984 TEKT1Q969V4 418 aa23.72■■□□□ 1.39
CLN3-205ENST00000359984 NACAP1Q9BZK3 213 aa23.72■■□□□ 1.39
CLN3-205ENST00000359984 FZD9O00144 591 aa23.71■■□□□ 1.39
CLN3-205ENST00000359984 LMNB1P20700 586 aa23.71■■□□□ 1.39
CLN3-205ENST00000359984 CRKP46108 304 aa23.71■■□□□ 1.39
CLN3-205ENST00000359984 HDLBPQ00341 1268 aaKnown RBP23.71■■□□□ 1.39
CLN3-205ENST00000359984 RABEP1Q15276 862 aa23.71■■□□□ 1.39
CLN3-205ENST00000359984 CERS3Q8IU89 383 aa23.71■■□□□ 1.39
CLN3-205ENST00000359984 ZBTB12Q9Y330 459 aaPredicted RBP23.71■■□□□ 1.39
CLN3-205ENST00000359984 ZMYM6O95789 1325 aa23.71■■□□□ 1.39
CLN3-205ENST00000359984 ADCK5Q3MIX3 580 aa23.7■■□□□ 1.39
CLN3-205ENST00000359984 NAPBQ9H115 298 aa23.7■■□□□ 1.39
CLN3-205ENST00000359984 TDO2P48775 406 aa23.7■■□□□ 1.38
CLN3-205ENST00000359984 RHBDL3P58872 404 aa23.7■■□□□ 1.38
CLN3-205ENST00000359984 TNIP1Q15025 636 aa23.7■■□□□ 1.38
CLN3-205ENST00000359984 IMMTQ16891 758 aaKnown RBP23.7■■□□□ 1.38
CLN3-205ENST00000359984 PLCG2P16885 1265 aa23.69■■□□□ 1.38
CLN3-205ENST00000359984 HAND2P61296 217 aa23.69■■□□□ 1.38
CLN3-205ENST00000359984 GIMAP6Q6P9H5 292 aa23.69■■□□□ 1.38
CLN3-205ENST00000359984 AGBL3Q8NEM8 1001 aa23.69■■□□□ 1.38
CLN3-205ENST00000359984 ZDHHC15Q96MV8 337 aa23.69■■□□□ 1.38
CLN3-205ENST00000359984 SERPINA10Q9UK55 444 aa23.69■■□□□ 1.38
CLN3-205ENST00000359984 APOBEC3HQ6NTF7 200 aaKnown RBP23.68■■□□□ 1.38
CLN3-205ENST00000359984 ATP8A2Q9NTI2 1148 aa23.68■■□□□ 1.38
CLN3-205ENST00000359984 ZNF213O14771 459 aa23.68■■□□□ 1.38
CLN3-205ENST00000359984 EIF6P56537 245 aaKnown RBP23.68■■□□□ 1.38
CLN3-205ENST00000359984 JAKMIP1Q96N16 626 aaKnown RBP23.68■■□□□ 1.38
CLN3-205ENST00000359984 DCP1AQ9NPI6 582 aaPredicted RBP23.68■■□□□ 1.38
CLN3-205ENST00000359984 STOX1Q6ZVD7 989 aa23.67■■□□□ 1.38
CLN3-205ENST00000359984 TEX11Q8IYF3 940 aa23.67■■□□□ 1.38
CLN3-205ENST00000359984 TM6SF1Q9BZW5 370 aa23.67■■□□□ 1.38
CLN3-205ENST00000359984 PCDHAC2Q9Y5I4 1007 aa23.67■■□□□ 1.38
CLN3-205ENST00000359984 ADAMTSL1Q8N6G6 1762 aa23.67■■□□□ 1.38
CLN3-205ENST00000359984 USP5P45974 858 aa23.66■■□□□ 1.38
CLN3-205ENST00000359984 KRT32Q14532 448 aa23.66■■□□□ 1.38
CLN3-205ENST00000359984 TGFBRAP1Q8WUH2 860 aa23.66■■□□□ 1.38
CLN3-205ENST00000359984 UPF3BQ9BZI7 483 aaKnown RBP23.66■■□□□ 1.38
CLN3-205ENST00000359984 MKRN1Q9UHC7 482 aaKnown RBP23.66■■□□□ 1.38
CLN3-205ENST00000359984 RBM5P52756 815 aaKnown RBP eCLIP23.66■■□□□ 1.38
CLN3-205ENST00000359984 GPR162Q16538 588 aa23.66■■□□□ 1.38
CLN3-205ENST00000359984 IPO9Q96P70 1041 aaKnown RBP23.66■■□□□ 1.38
CLN3-205ENST00000359984 NBPF3Q9H094 633 aa23.66■■□□□ 1.38
CLN3-205ENST00000359984 USP40Q9NVE5 1235 aa23.66■■□□□ 1.38
CLN3-205ENST00000359984 E7EWF7 191 aa23.65■■□□□ 1.38
CLN3-205ENST00000359984 CASTP20810 708 aaKnown RBP23.65■■□□□ 1.38
CLN3-205ENST00000359984 NEK4P51957 841 aa23.65■■□□□ 1.38
CLN3-205ENST00000359984 DDRGK1Q96HY6 314 aa23.65■■□□□ 1.38
CLN3-205ENST00000359984 ZSWIM6Q9HCJ5 1215 aa23.65■■□□□ 1.38
CLN3-205ENST00000359984 HDAC9Q9UKV0 1011 aa23.65■■□□□ 1.38
CLN3-205ENST00000359984 ZNF541Q9H0D2 1346 aa23.65■■□□□ 1.38
CLN3-205ENST00000359984 USP17L8P0C7I0 530 aa23.64■■□□□ 1.38
CLN3-205ENST00000359984 CPA1P15085 419 aa23.64■■□□□ 1.38
CLN3-205ENST00000359984 COL9A3Q14050 684 aaPredicted RBP23.64■■□□□ 1.38
CLN3-205ENST00000359984 CFAP100Q494V2 611 aa23.64■■□□□ 1.38
CLN3-205ENST00000359984 CDC42EP5Q6NZY7 148 aa23.64■■□□□ 1.38
CLN3-205ENST00000359984 SBF1O95248 1867 aa23.64■■□□□ 1.38
CLN3-205ENST00000359984 PSMA5P28066 241 aa23.64■■□□□ 1.37
CLN3-205ENST00000359984 CTR9Q6PD62 1173 aa23.64■■□□□ 1.37
CLN3-205ENST00000359984 OGFOD1Q8N543 542 aa23.64■■□□□ 1.37
CLN3-205ENST00000359984 USP17L12C9JPN9 530 aa23.63■■□□□ 1.37
CLN3-205ENST00000359984 USP17L21D6R901 530 aa23.63■■□□□ 1.37
CLN3-205ENST00000359984 CD2BP2O95400 341 aaKnown RBP23.63■■□□□ 1.37
CLN3-205ENST00000359984 TBC1D10CQ8IV04 446 aa23.63■■□□□ 1.37
CLN3-205ENST00000359984 MAPKAPK5Q8IW41 473 aa23.63■■□□□ 1.37
CLN3-205ENST00000359984 RNF181Q9P0P0 153 aa23.63■■□□□ 1.37
CLN3-205ENST00000359984 GJA3Q9Y6H8 435 aa23.63■■□□□ 1.37
CLN3-205ENST00000359984 MINDY4BA8MYZ0 360 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 RPS12P25398 132 aaKnown RBP23.62■■□□□ 1.37
CLN3-205ENST00000359984 CTDSPL2Q05D32 466 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 SNX21Q969T3 373 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 NEK1Q96PY6 1258 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 MCM9Q9NXL9 1143 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 DICER1Q9UPY3 1922 aaKnown RBP23.62■■□□□ 1.37
CLN3-205ENST00000359984 CYP2D7A0A087X1C5 515 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 WDHD1O75717 1129 aaPredicted RBP23.62■■□□□ 1.37
CLN3-205ENST00000359984 PPARAQ07869 468 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 SBK1Q52WX2 424 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 PRMT6Q96LA8 375 aaPredicted RBP23.62■■□□□ 1.37
CLN3-205ENST00000359984 CYP46A1Q9Y6A2 500 aa23.62■■□□□ 1.37
CLN3-205ENST00000359984 UTRNP46939 3433 aa23.61■■□□□ 1.37
CLN3-205ENST00000359984 SMIM22K7EJ46 135 aa23.61■■□□□ 1.37
CLN3-205ENST00000359984 GMPSP49915 693 aaPredicted RBP23.61■■□□□ 1.37
CLN3-205ENST00000359984 BLOC1S2Q6QNY1 142 aa23.61■■□□□ 1.37
CLN3-205ENST00000359984 RUFY3Q7L099 469 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms