RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 INTS8Q75QN2 995 aaKnown RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 KIFAP3Q92845 792 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 GMNNO75496 209 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 VIMP08670 466 aaKnown RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 HPDP32754 393 aaPredicted RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 PPP2R3AQ06190 1150 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 INF2Q27J81 1249 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 RPUSD2Q8IZ73 545 aaKnown RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 ELP1O95163 1332 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 CCDC169A6NNP5 214 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 RPL13P26373 211 aaKnown RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 EIF4A2Q14240 407 aaKnown RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 CCDC117Q8IWD4 279 aaPredicted RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 MBD4O95243 580 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 TNFAIP3P21580 790 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 IRX5P78411 483 aaPredicted RBP20.61■□□□□ 0.89
SHANK1-202ENST00000359082 DDB1Q16531 1140 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 PFDN4Q9NQP4 134 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 HDXQ7Z353 690 aa20.61■□□□□ 0.89
SHANK1-202ENST00000359082 SPOPO43791 374 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 EIF6P56537 245 aaKnown RBP20.6■□□□□ 0.89
SHANK1-202ENST00000359082 CCDC26Q8TAB7 109 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 TPTE2Q6XPS3 522 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 GTF3C6Q969F1 213 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 CNGA4Q8IV77 575 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 VPS16Q9H269 839 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 RTCBQ9Y3I0 505 aaKnown RBP20.6■□□□□ 0.89
SHANK1-202ENST00000359082 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.6■□□□□ 0.89
SHANK1-202ENST00000359082 PDE4DQ08499 809 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 GTPBP4Q9BZE4 634 aaKnown RBP20.6■□□□□ 0.89
SHANK1-202ENST00000359082 PPANQ9NQ55 473 aaKnown RBP20.6■□□□□ 0.89
SHANK1-202ENST00000359082 TFCP2L1Q9NZI6 479 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 ZRANB1Q9UGI0 708 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 CABLES1Q8TDN4 633 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 ANKRD2Q9GZV1 360 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 FAM204AQ9H8W3 233 aa20.6■□□□□ 0.89
SHANK1-202ENST00000359082 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.6■□□□□ 0.89
SHANK1-202ENST00000359082 CEP85LQ5SZL2 805 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 NKIRAS1Q9NYS0 192 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.59■□□□□ 0.89
SHANK1-202ENST00000359082 RAPGEF6Q8TEU7 1601 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 STIM2Q9P246 746 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 ITSN2Q9NZM3 1697 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 HAUS7Q99871 368 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 CPA1P15085 419 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 RBM17Q96I25 401 aaKnown RBP20.59■□□□□ 0.89
SHANK1-202ENST00000359082 ASIC2Q16515 512 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 PIK3AP1Q6ZUJ8 805 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 STMN2Q93045 179 aa20.59■□□□□ 0.89
SHANK1-202ENST00000359082 MKRN1Q9UHC7 482 aaKnown RBP20.59■□□□□ 0.89
SHANK1-202ENST00000359082 STX10O60499 249 aa20.58■□□□□ 0.89
SHANK1-202ENST00000359082 ZNF608Q9ULD9 1512 aaPredicted RBP20.58■□□□□ 0.89
SHANK1-202ENST00000359082 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.89
SHANK1-202ENST00000359082 C8orf34Q49A92 452 aa20.58■□□□□ 0.88
SHANK1-202ENST00000359082 UTP14CQ5TAP6 766 aaKnown RBP20.58■□□□□ 0.88
SHANK1-202ENST00000359082 JDP2Q8WYK2 163 aa20.58■□□□□ 0.88
SHANK1-202ENST00000359082 NAP1L4Q99733 375 aaKnown RBP20.58■□□□□ 0.88
SHANK1-202ENST00000359082 CALUO43852 315 aaPredicted RBP20.58■□□□□ 0.88
SHANK1-202ENST00000359082 MAEAQ7L5Y9 396 aa20.58■□□□□ 0.88
SHANK1-202ENST00000359082 VPS52Q8N1B4 723 aa20.58■□□□□ 0.88
SHANK1-202ENST00000359082 GPR161Q8N6U8 529 aaKnown RBP20.58■□□□□ 0.88
SHANK1-202ENST00000359082 PPARDQ03181 441 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.57■□□□□ 0.88
SHANK1-202ENST00000359082 MAPK8IP1Q9UQF2 711 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 B4E1Z4 1266 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 IGSF3O75054 1194 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 ATP5DP30049 168 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 IL2RBP14784 551 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 HSPA1LP34931 641 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 LACTBP83111 547 aaPredicted RBP20.57■□□□□ 0.88
SHANK1-202ENST00000359082 MYL5Q02045 173 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 FCHSD1Q86WN1 690 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 DDX39AO00148 427 aaKnown RBP20.57■□□□□ 0.88
SHANK1-202ENST00000359082 DAPK3O43293 454 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 IGSF22Q8N9C0 903 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 GJA3Q9Y6H8 435 aa20.57■□□□□ 0.88
SHANK1-202ENST00000359082 HELLSQ9NRZ9 838 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 WDR7Q9Y4E6 1490 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 DUOX2Q9NRD8 1548 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 CCDC94Q9BW85 323 aaPredicted RBP20.56■□□□□ 0.88
SHANK1-202ENST00000359082 ARMT1Q9H993 441 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 BIN2Q9UBW5 565 aaPredicted RBP20.56■□□□□ 0.88
SHANK1-202ENST00000359082 KRT24Q2M2I5 525 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 UTP11Q9Y3A2 253 aaKnown RBP20.56■□□□□ 0.88
SHANK1-202ENST00000359082 EVCP57679 992 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 TUBB4BP68371 445 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 GPIHBP1Q8IV16 184 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 CHMLP26374 656 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 NAA25Q14CX7 972 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 TSPYL6Q8N831 410 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 UIMC1Q96RL1 719 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 EYA3Q99504 573 aa20.56■□□□□ 0.88
SHANK1-202ENST00000359082 CLUL1Q15846 466 aa20.55■□□□□ 0.88
SHANK1-202ENST00000359082 FYB2Q5VWT5 728 aa20.55■□□□□ 0.88
SHANK1-202ENST00000359082 THOC2Q8NI27 1593 aaKnown RBP20.55■□□□□ 0.88
SHANK1-202ENST00000359082 MAP3K5Q99683 1374 aa20.55■□□□□ 0.88
SHANK1-202ENST00000359082 PEG3Q9GZU2 1588 aa20.55■□□□□ 0.88
SHANK1-202ENST00000359082 TEX11Q8IYF3 940 aa20.55■□□□□ 0.88
SHANK1-202ENST00000359082 C10orf67Q8IYJ2 551 aa20.55■□□□□ 0.88
SHANK1-202ENST00000359082 ARFGAP2Q8N6H7 521 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms