RNA–Protein interactions for RNA: ENST00000356316.7

CAPN3-204, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 1,291 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-204ENST00000356316 VGLL4Q14135 290 aa13.23□□□□□ -0.29
CAPN3-204ENST00000356316 CDAN1Q8IWY9 1227 aa13.23□□□□□ -0.29
CAPN3-204ENST00000356316 ZGPATQ8N5A5 531 aaKnown RBP13.23□□□□□ -0.29
CAPN3-204ENST00000356316 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.23□□□□□ -0.29
CAPN3-204ENST00000356316 OTUD5Q96G74 571 aa13.23□□□□□ -0.29
CAPN3-204ENST00000356316 COPRSQ9NQ92 184 aa13.23□□□□□ -0.29
CAPN3-204ENST00000356316 AK9Q5TCS8 1911 aa13.23□□□□□ -0.29
CAPN3-204ENST00000356316 CCL15-CCL14A0A0B4J2E2 113 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 SP3Q02447 781 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 CCL15Q16663 113 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 INTS3Q68E01 1043 aaKnown RBP13.22□□□□□ -0.29
CAPN3-204ENST00000356316 FAM151AQ8WW52 585 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 FRAT1Q92837 279 aaPredicted RBP13.22□□□□□ -0.29
CAPN3-204ENST00000356316 WRNIP1Q96S55 665 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 MEIS3Q99687 375 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 PTPN18Q99952 460 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 ZFYVE28Q9HCC9 887 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 AKAP2Q9Y2D5 859 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 LAMB1P07942 1786 aa13.22□□□□□ -0.29
CAPN3-204ENST00000356316 SRGAP3O43295 1099 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 CETPP11597 493 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 TCP10Q12799 353 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 MIGA2Q7L4E1 593 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 ERO1BQ86YB8 467 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 SLF2Q8IX21 1173 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 ZKSCAN4Q969J2 545 aaPredicted RBP13.21□□□□□ -0.29
CAPN3-204ENST00000356316 MS4A4AQ96JQ5 239 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 ZNF341Q9BYN7 854 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 USP40Q9NVE5 1235 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 PA2G4Q9UQ80 394 aaKnown RBP13.21□□□□□ -0.29
CAPN3-204ENST00000356316 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
CAPN3-204ENST00000356316 OTOFQ9HC10 1997 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 SPDYE5A6NIY4 337 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 PHKA1P46020 1223 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 TIMM10P62072 90 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 SNAPC2Q13487 334 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 TAF1CQ15572 869 aaPredicted RBP13.2□□□□□ -0.3
CAPN3-204ENST00000356316 DIXDC1Q155Q3 683 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 GORABQ5T7V8 394 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 SPTY2D1Q68D10 685 aaPredicted RBP13.2□□□□□ -0.3
CAPN3-204ENST00000356316 CCDC102BQ68D86 513 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 CDC42EP5Q6NZY7 148 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 OTOP1Q7RTM1 612 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 CD99L2Q8TCZ2 262 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 EFCC1Q9HA90 598 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 DAGLAQ9Y4D2 1042 aa13.2□□□□□ -0.3
CAPN3-204ENST00000356316 SALL1Q9NSC2 1324 aa13.19□□□□□ -0.3
CAPN3-204ENST00000356316 GNAI2P04899 355 aa13.19□□□□□ -0.3
CAPN3-204ENST00000356316 PRDX5P30044 214 aa13.19□□□□□ -0.3
CAPN3-204ENST00000356316 MVPQ14764 893 aaKnown RBP13.19□□□□□ -0.3
CAPN3-204ENST00000356316 DZIP1Q86YF9 867 aaKnown RBP13.19□□□□□ -0.3
CAPN3-204ENST00000356316 BRI3BPQ8WY22 251 aa13.19□□□□□ -0.3
CAPN3-204ENST00000356316 NEUROD6Q96NK8 337 aa13.19□□□□□ -0.3
CAPN3-204ENST00000356316 ABCF2Q9UG63 623 aa13.19□□□□□ -0.3
CAPN3-204ENST00000356316 ADORA1P30542 326 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 PPATQ06203 517 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 TFCP2Q12800 502 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 G3BP1Q13283 466 aaKnown RBP eCLIP13.18□□□□□ -0.3
CAPN3-204ENST00000356316 PPIL2Q13356 520 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 KIF22Q14807 665 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 ATF7IPQ6VMQ6 1270 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 ZCCHC17Q9NP64 241 aaKnown RBP13.18□□□□□ -0.3
CAPN3-204ENST00000356316 PTPN22Q9Y2R2 807 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 SNCAIPQ9Y6H5 919 aa13.18□□□□□ -0.3
CAPN3-204ENST00000356316 A0A1B0GUL7 405 aa13.17□□□□□ -0.3
CAPN3-204ENST00000356316 IRF6O14896 467 aa13.17□□□□□ -0.3
CAPN3-204ENST00000356316 NBPF11Q86T75 865 aa13.17□□□□□ -0.3
CAPN3-204ENST00000356316 ZSCAN29Q8IWY8 852 aaPredicted RBP13.17□□□□□ -0.3
CAPN3-204ENST00000356316 FAM43AQ8N2R8 423 aa13.17□□□□□ -0.3
CAPN3-204ENST00000356316 CLUAP1Q96AJ1 413 aa13.17□□□□□ -0.3
CAPN3-204ENST00000356316 XAGE2Q96GT9 111 aa13.17□□□□□ -0.3
CAPN3-204ENST00000356316 RPAP1Q9BWH6 1393 aaPredicted RBP13.17□□□□□ -0.3
CAPN3-204ENST00000356316 CENPFP49454 3210 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 MYH2Q9UKX2 1941 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 SPDYE4A6NLX3 237 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 BCAR3O75815 825 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 TRIM27P14373 513 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 NFIAQ12857 509 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 MTX1Q13505 466 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 ERICH6Q7L0X2 663 aa13.16□□□□□ -0.3
CAPN3-204ENST00000356316 TLR2O60603 784 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 ENTPD3O75355 529 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 INPP5BP32019 993 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 GSTO1P78417 241 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 RASGRF1Q13972 1273 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 ZKSCAN2Q63HK3 967 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-204ENST00000356316 FAM198AQ9UFP1 575 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 ZNF112Q9UJU3 913 aa13.15□□□□□ -0.3
CAPN3-204ENST00000356316 PDS5AQ29RF7 1337 aaKnown RBP13.14□□□□□ -0.31
CAPN3-204ENST00000356316 BTBD19C9JJ37 291 aa13.14□□□□□ -0.31
CAPN3-204ENST00000356316 LDHCP07864 332 aa13.14□□□□□ -0.31
CAPN3-204ENST00000356316 RGS3P49796 1198 aa13.14□□□□□ -0.31
CAPN3-204ENST00000356316 HNRNPUQ00839 825 aaKnown RBP eCLIP13.14□□□□□ -0.31
CAPN3-204ENST00000356316 OS9Q13438 667 aaPredicted RBP13.14□□□□□ -0.31
CAPN3-204ENST00000356316 FAM163AQ96GL9 167 aaPredicted RBP13.14□□□□□ -0.31
CAPN3-204ENST00000356316 TMEM106CQ9BVX2 250 aa13.14□□□□□ -0.31
CAPN3-204ENST00000356316 IDI2Q9BXS1 227 aa13.14□□□□□ -0.31
CAPN3-204ENST00000356316 PICK1Q9NRD5 415 aa13.14□□□□□ -0.31
CAPN3-204ENST00000356316 GNRH1P01148 92 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms