RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 SLC8A3P57103 927 aa17.94■□□□□ 0.46
RTN3-205ENST00000356000 MAGEC3Q8TD91 643 aa17.94■□□□□ 0.46
RTN3-205ENST00000356000 CPSF1Q10570 1443 aaKnown RBP17.94■□□□□ 0.46
RTN3-205ENST00000356000 AFF2P51816 1311 aa17.94■□□□□ 0.46
RTN3-205ENST00000356000 CBFA2T2O43439 604 aa17.94■□□□□ 0.46
RTN3-205ENST00000356000 RCSD1Q6JBY9 416 aa17.94■□□□□ 0.46
RTN3-205ENST00000356000 VSTM4Q8IW00 320 aa17.94■□□□□ 0.46
RTN3-205ENST00000356000 UPF1Q92900 1129 aaKnown RBP eCLIP17.94■□□□□ 0.461e-25■■■■□ 25.8
RTN3-205ENST00000356000 STX10O60499 249 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 RPS6KA3P51812 740 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 PLCB4Q15147 1175 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 TOGARAM2Q6ZUX3 1019 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 YTHDF3Q7Z739 585 aaKnown RBP17.93■□□□□ 0.46
RTN3-205ENST00000356000 MAB21L3Q8N8X9 362 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 PHACTR3Q96KR7 559 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 PAIP2Q9BPZ3 127 aaKnown RBP17.93■□□□□ 0.46
RTN3-205ENST00000356000 CAPS2Q9BXY5 557 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 KIF9Q9HAQ2 790 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 AP1G2O75843 785 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 MAP4K4O95819 1239 aaPredicted RBP17.93■□□□□ 0.46
RTN3-205ENST00000356000 ACTN3Q08043 901 aaPredicted RBP17.93■□□□□ 0.46
RTN3-205ENST00000356000 GOLGA8FQ08AF8 430 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 GOLGA8DPQ0D2H9 430 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 CDCA2Q69YH5 1023 aaPredicted RBP17.93■□□□□ 0.46
RTN3-205ENST00000356000 THOC1Q96FV9 657 aaKnown RBP17.93■□□□□ 0.46
RTN3-205ENST00000356000 EHD4Q9H223 541 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 ATP6V0A4Q9HBG4 840 aa17.93■□□□□ 0.46
RTN3-205ENST00000356000 IKBKBO14920 756 aa17.92■□□□□ 0.46
RTN3-205ENST00000356000 ADD1P35611 737 aaKnown RBP17.92■□□□□ 0.46
RTN3-205ENST00000356000 SPG7Q9UQ90 795 aa17.92■□□□□ 0.46
RTN3-205ENST00000356000 UBASH3AP57075 661 aa17.92■□□□□ 0.46
RTN3-205ENST00000356000 KIAA1468Q9P260 1216 aa17.92■□□□□ 0.46
RTN3-205ENST00000356000 SAMM50Q9Y512 469 aa17.92■□□□□ 0.46
RTN3-205ENST00000356000 COQ9O75208 318 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 TOP1P11387 765 aaKnown RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 LMOD1P29536 600 aaPredicted RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 SLC5A9Q2M3M2 681 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 CCDC40Q4G0X9 1142 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 DPF2Q92785 391 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 HSD3B7Q9H2F3 369 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 VCPKMTQ9H867 229 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 FRMD3A2A2Y4 597 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 ZNF202O95125 648 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 EZRP15311 586 aaKnown RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 PECAM1P16284 738 aaPredicted RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 KARSQ15046 597 aaKnown RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 PRPF40BQ6NWY9 871 aaKnown RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 CCDC125Q86Z20 511 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 RIN2Q8WYP3 895 aaPredicted RBP17.91■□□□□ 0.46
RTN3-205ENST00000356000 GGNBP2Q9H3C7 697 aa17.91■□□□□ 0.46
RTN3-205ENST00000356000 GNAI2P04899 355 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 ATP1A3P13637 1013 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 ZNF513Q8N8E2 541 aaPredicted RBP17.9■□□□□ 0.46
RTN3-205ENST00000356000 FSIP1Q8NA03 581 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 PARD3BQ8TEW8 1205 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 FMNL2Q96PY5 1086 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 PAGR1Q9BTK6 254 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 GOLGA6CA6NDK9 693 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 SKAP2O75563 359 aaPredicted RBP17.9■□□□□ 0.46
RTN3-205ENST00000356000 GOLGA6DP0CG33 693 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 STIM1Q13586 685 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 NAA25Q14CX7 972 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 FMR1NBQ8N0W7 255 aaPredicted RBP17.9■□□□□ 0.46
RTN3-205ENST00000356000 IRX2Q9BZI1 471 aaPredicted RBP17.9■□□□□ 0.46
RTN3-205ENST00000356000 GOLGA6AQ9NYA3 693 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 ATRNO75882 1429 aa17.9■□□□□ 0.46
RTN3-205ENST00000356000 CTAGE15A4D2H0 777 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 CTAGE8P0CG41 777 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 GGCXP38435 758 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 NLRP12P59046 1061 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 CEBPZQ03701 1054 aaKnown RBP17.89■□□□□ 0.46
RTN3-205ENST00000356000 CTAGE6Q86UF2 777 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 CCDC50Q8IVM0 306 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 CTAGE4Q8IX94 777 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 PI4K2BQ8TCG2 481 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 SDF4Q9BRK5 362 aa17.89■□□□□ 0.46
RTN3-205ENST00000356000 FMN2Q9NZ56 1722 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 ANKRD26Q9UPS8 1709 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 ROBO2Q9HCK4 1378 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 RAB11FIP3O75154 756 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 GNGT1P63211 74 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 PTH1RQ03431 593 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 TBX2Q13207 712 aaPredicted RBP17.89■□□□□ 0.45
RTN3-205ENST00000356000 SNCBQ16143 134 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 PDCD2Q16342 344 aaPredicted RBP17.89■□□□□ 0.45
RTN3-205ENST00000356000 CEP57Q86XR8 500 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 COG1Q8WTW3 980 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 SH3GL2Q99962 352 aa17.89■□□□□ 0.45
RTN3-205ENST00000356000 MRPL44Q9H9J2 332 aaKnown RBP17.89■□□□□ 0.45
RTN3-205ENST00000356000 AGPSO00116 658 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 PFKFB2O60825 505 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 AMPHP49418 695 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 ANKRD1Q15327 319 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 NUTM2DQ5VT03 806 aaPredicted RBP17.88■□□□□ 0.45
RTN3-205ENST00000356000 HOMER3Q9NSC5 361 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 PRPHP41219 470 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 SF3B2Q13435 895 aaKnown RBP17.88■□□□□ 0.45
RTN3-205ENST00000356000 NECTIN1Q15223 517 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 CNTROBQ8N137 903 aa17.88■□□□□ 0.45
RTN3-205ENST00000356000 FNBP4Q8N3X1 1017 aaPredicted RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms