RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 PYCARDQ9ULZ3 195 aa10.11□□□□□ -0.79
TRIM55-204ENST00000353317 CCDC192P0DO97 292 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 SPC24Q8NBT2 197 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 STK32BQ9NY57 414 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 ANKIB1Q9P2G1 1089 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 LRRC37AA6NMS7 1700 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 LIG1P18858 919 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 GRIK5Q16478 980 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 CAMK4Q16566 473 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 PARP3Q9Y6F1 533 aa10.1□□□□□ -0.79
TRIM55-204ENST00000353317 CHRNA5P30532 468 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 BAG6P46379 1132 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 KCNJ4P48050 445 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 KRT85P78386 507 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 MAGEB6Q8N7X4 407 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 APPBP2Q92624 585 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 RBM17Q96I25 401 aaKnown RBP10.09□□□□□ -0.79
TRIM55-204ENST00000353317 ANKRD2Q9GZV1 360 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 GPAA1O43292 621 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 CRAMP1Q96RY5 1269 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 DENND2AQ9ULE3 1009 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 DUOX1Q9NRD9 1551 aa10.09□□□□□ -0.79
TRIM55-204ENST00000353317 SMIM22K7EJ46 135 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 HIBADHP31937 336 aaKnown RBP10.08□□□□□ -0.8
TRIM55-204ENST00000353317 LUZP1Q86V48 1076 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 FAM200AQ8TCP9 573 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 CCDC94Q9BW85 323 aaPredicted RBP10.08□□□□□ -0.8
TRIM55-204ENST00000353317 ABCF2Q9UG63 623 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 KIF3AQ9Y496 699 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 MRVI1Q9Y6F6 885 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 ELP1O95163 1332 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 PRKAB2O43741 272 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 FGAP02671 866 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 TYRO3Q06418 890 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 TTF1Q15361 905 aaPredicted RBP10.08□□□□□ -0.8
TRIM55-204ENST00000353317 UBE3CQ15386 1083 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 MAP3K11Q16584 847 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 CAVIN4Q5BKX8 364 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 NBPF3Q9H094 633 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 NUP62CLQ9H1M0 184 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 PRDM4Q9UKN5 801 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 XDHP47989 1333 aa10.08□□□□□ -0.8
TRIM55-204ENST00000353317 BBOX1O75936 387 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 ZFYP08048 801 aaPredicted RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 PSMA5P28066 241 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 PRDX5P30044 214 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 SF3B2Q13435 895 aaKnown RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 TOB2Q14106 344 aaPredicted RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 BLOC1S2Q6QNY1 142 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 CKAP2LQ8IYA6 745 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 MIGA1Q8NAN2 632 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 TBC1D16Q8TBP0 767 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 STRBPQ96SI9 672 aaKnown RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 DSCC1Q9BVC3 393 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 DACT1Q9NYF0 836 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 TFIP11Q9UBB9 837 aaKnown RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 TACC3Q9Y6A5 838 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 BAZ2AQ9UIF9 1905 aaKnown RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 UFL1O94874 794 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 PDCP20941 246 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 HAND2P61296 217 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 CHAF1AQ13111 956 aaPredicted RBP10.07□□□□□ -0.8
TRIM55-204ENST00000353317 TSGA10IPQ3SY00 556 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 VPS37DQ86XT2 251 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 ARMT1Q9H993 441 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 INCENPQ9NQS7 918 aa10.07□□□□□ -0.8
TRIM55-204ENST00000353317 PPEF1O14829 653 aaPredicted RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 TPM3P06753 285 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 PDIA4P13667 645 aaKnown RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 PTGS1P23219 599 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 RPS6KB1P23443 525 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 TICAM2Q86XR7 235 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 LCORLQ8N3X6 602 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 EPB41L4AQ9HCS5 686 aaPredicted RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 LRP2BPQ9P2M1 347 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 LEMD3Q9Y2U8 911 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 GOLGA6L6A8MZA4 724 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 NPR1P16066 1061 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 HMGB2P26583 209 aaKnown RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 STK3Q13188 491 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 ANO6Q4KMQ2 910 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 SP8Q8IXZ3 490 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 SMAP1Q8IYB5 467 aaPredicted RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 TDRD7Q8NHU6 1098 aaKnown RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 ZNF622Q969S3 477 aaKnown RBP eCLIP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 LRRC2Q9BYS8 371 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 TNMDQ9H2S6 317 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 PODXL2Q9NZ53 605 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 ZNF219Q9P2Y4 722 aaPredicted RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 ATP6V0A2Q9Y487 856 aa10.06□□□□□ -0.8
TRIM55-204ENST00000353317 U3KPZ7 1027 aaPredicted RBP10.06□□□□□ -0.8
TRIM55-204ENST00000353317 RIOK3O14730 519 aaKnown RBP10.05□□□□□ -0.8
TRIM55-204ENST00000353317 MBD4O95243 580 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 DYNLL1P63167 89 aaKnown RBP10.05□□□□□ -0.8
TRIM55-204ENST00000353317 EVX2Q03828 476 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 MAP3K12Q12852 859 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 ANKRD1Q15327 319 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 RNF20Q5VTR2 975 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 C2CD5Q86YS7 1000 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms