RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 PAG1Q9NWQ8 432 aa11.1□□□□□ -0.63
HOXA1-201ENST00000343060 ARFGEF2Q9Y6D5 1785 aa11.1□□□□□ -0.63
HOXA1-201ENST00000343060 CHMP4BP1P59074 171 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 HDXQ7Z353 690 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 C10orf67Q8IYJ2 551 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 JMYQ8N9B5 988 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 PPFIA3O75145 1194 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 GYS2P54840 703 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 PNOCQ13519 176 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 LEKR1Q6ZMV7 388 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 MB21D2Q8IYB1 491 aaPredicted RBP11.09□□□□□ -0.63
HOXA1-201ENST00000343060 PLCD3Q8N3E9 789 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 CEP112Q8N8E3 955 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 L1RE1Q9UN81 338 aa11.09□□□□□ -0.63
HOXA1-201ENST00000343060 EIF3JO75822 258 aaKnown RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 BMP6P22004 513 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 C1orf141Q5JVX7 400 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 LRP10Q7Z4F1 713 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 FAM177A1Q8N128 213 aaPredicted RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 PANX2Q96RD6 677 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 MAP3K14Q99558 947 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 MRPL44Q9H9J2 332 aaKnown RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 CDC23Q9UJX2 597 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 CPDO75976 1380 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 GOLGA8BA8MQT2 603 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 TNNT3P45378 269 aaPredicted RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 PDE4BQ07343 736 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 AIMP1Q12904 312 aaKnown RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 MAPK8IP2Q13387 824 aaPredicted RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 NT5DC1Q5TFE4 455 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 ISM2Q6H9L7 571 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 CHST3Q7LGC8 479 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 FOXP4Q8IVH2 680 aaPredicted RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 CCDC12Q8WUD4 166 aaPredicted RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 SLC26A8Q96RN1 970 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 MYD88Q99836 296 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 PDE11AQ9HCR9 933 aa11.08□□□□□ -0.64
HOXA1-201ENST00000343060 GPHNQ9NQX3 736 aaPredicted RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.08□□□□□ -0.64
HOXA1-201ENST00000343060 GOLIM4O00461 696 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 FOXP2O15409 715 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 RNF113AO15541 343 aaKnown RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 ERLIN1O75477 346 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 CCDC175P0C221 793 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 MARCKSP29966 332 aaPredicted RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 CDC27P30260 824 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 MAGEA9P43362 315 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 CASP7P55210 303 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 MDM2Q00987 491 aaPredicted RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 ARHGEF25Q86VW2 580 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 ENOX1Q8TC92 643 aaKnown RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 MKRN1Q9UHC7 482 aaKnown RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 SCN11AQ9UI33 1791 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 KLF18A0A0U1RQI7 1052 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 A0A1B0GUL7 405 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 TUBBP07437 444 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 FECHP22830 423 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 NOM1Q5C9Z4 860 aaKnown RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 GOLGA6L1Q8N7Z2 621 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 FAM71BQ8TC56 605 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 XAGE3Q8WTP9 111 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 PNKPQ96T60 521 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 NAA15Q9BXJ9 866 aaKnown RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 VPS18Q9P253 973 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 PCDHA5Q9Y5H7 936 aa11.07□□□□□ -0.64
HOXA1-201ENST00000343060 PARP4Q9UKK3 1724 aaKnown RBP11.07□□□□□ -0.64
HOXA1-201ENST00000343060 M0R2C6 588 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 PRC1O43663 620 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 ANTXR2P58335 489 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 IRX3P78415 501 aaPredicted RBP11.06□□□□□ -0.64
HOXA1-201ENST00000343060 ICE2Q659A1 982 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 CCDC102BQ68D86 513 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 VPS37DQ86XT2 251 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 ESF1Q9H501 851 aaKnown RBP11.06□□□□□ -0.64
HOXA1-201ENST00000343060 RAI14Q9P0K7 980 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 ADGRG1Q9Y653 693 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 A0A1B0GTH6 734 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 SARSP49591 514 aaKnown RBP11.06□□□□□ -0.64
HOXA1-201ENST00000343060 ADKP55263 362 aaKnown RBP11.06□□□□□ -0.64
HOXA1-201ENST00000343060 KARSQ15046 597 aaKnown RBP11.06□□□□□ -0.64
HOXA1-201ENST00000343060 PTPN21Q16825 1174 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 TTLL5Q6EMB2 1281 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 MLKLQ8NB16 471 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 GBP3Q9H0R5 595 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 BRMS1Q9HCU9 246 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 GJB4Q9NTQ9 266 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 MAN1B1Q9UKM7 699 aa11.06□□□□□ -0.64
HOXA1-201ENST00000343060 ZMYM6O95789 1325 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 CPP00450 1065 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 FMR1Q06787 632 aaKnown RBP eCLIP11.05□□□□□ -0.64
HOXA1-201ENST00000343060 NR1I3Q14994 352 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 LONRF3Q496Y0 759 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 ATG9AQ7Z3C6 839 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 TRIML1Q8N9V2 468 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 LRRC59Q96AG4 307 aaKnown RBP11.05□□□□□ -0.64
HOXA1-201ENST00000343060 DESI2Q9BSY9 194 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.05□□□□□ -0.64
HOXA1-201ENST00000343060 DACH1Q9UI36 760 aa11.05□□□□□ -0.64
HOXA1-201ENST00000343060 NFE2L3Q9Y4A8 694 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms