RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 RIOK1Q9BRS2 568 aaKnown RBP19.61■□□□□ 0.73
SMAD4-201ENST00000342988 LRRD1A4D1F6 860 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 ADAMTS8Q9UP79 889 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 A0A1B0GW55 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4L2P0CJ85 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4L3P0CJ86 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4L4P0CJ87 422 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4L5P0CJ88 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4L6P0CJ89 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4L7P0CJ90 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DEUP1Q05D60 604 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 PLS1Q14651 629 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 NEK1Q96PY6 1258 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 DUX4Q9UBX2 424 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 RAB17Q9H0T7 212 aa19.61■□□□□ 0.73
SMAD4-201ENST00000342988 RNF40O75150 1001 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 MMEL1Q495T6 779 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 SULT6B1Q6IMI4 303 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 RBM26Q5T8P6 1007 aaKnown RBP19.6■□□□□ 0.73
SMAD4-201ENST00000342988 TRIM68Q6AZZ1 485 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 SPATS2LQ9NUQ6 558 aaKnown RBP19.6■□□□□ 0.73
SMAD4-201ENST00000342988 KLHDC4Q8TBB5 520 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 TMCO5AQ8N6Q1 288 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 C16orf71Q8IYS4 520 aaPredicted RBP19.6■□□□□ 0.73
SMAD4-201ENST00000342988 MAIP1Q8WWC4 291 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 CARD10Q9BWT7 1032 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 TMOD3Q9NYL9 352 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 RTL1A6NKG5 1358 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 TRIML1Q8N9V2 468 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 FAM200AQ8TCP9 573 aa19.6■□□□□ 0.73
SMAD4-201ENST00000342988 TBC1D8O95759 1140 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 TSKSQ9UJT2 592 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 NKTRP30414 1462 aaKnown RBP19.59■□□□□ 0.73
SMAD4-201ENST00000342988 ZSCAN23Q3MJ62 389 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 HEATR3Q7Z4Q2 680 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 RTL9Q8NET4 1388 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 ZRANB2O95218 330 aaKnown RBP eCLIP19.59■□□□□ 0.73
SMAD4-201ENST00000342988 PPP2R3AQ06190 1150 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 CABS1Q96KC9 395 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 KCNA4P22459 653 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 USP6NLQ92738 828 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 AMOTL2Q9Y2J4 779 aa19.59■□□□□ 0.73
SMAD4-201ENST00000342988 BRDTQ58F21 947 aaPredicted RBP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 RSBN1LQ6PCB5 846 aaPredicted RBP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 STAG1Q8WVM7 1258 aa19.58■□□□□ 0.73
SMAD4-201ENST00000342988 POLR3CQ9BUI4 534 aaPredicted RBP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 SERPINB6P35237 376 aa19.58■□□□□ 0.73
SMAD4-201ENST00000342988 PNMA8AQ86V59 439 aaPredicted RBP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 MYCBPQ99417 103 aaPredicted RBP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 DDX21Q9NR30 783 aaKnown RBP eCLIP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 STX8Q9UNK0 236 aa19.58■□□□□ 0.73
SMAD4-201ENST00000342988 MAFGO15525 162 aa19.58■□□□□ 0.73
SMAD4-201ENST00000342988 ORC3Q9UBD5 711 aaPredicted RBP19.58■□□□□ 0.73
SMAD4-201ENST00000342988 RTN1Q16799 776 aa19.58■□□□□ 0.73
SMAD4-201ENST00000342988 IL1RAPL2Q9NP60 686 aa19.58■□□□□ 0.73
SMAD4-201ENST00000342988 RAD50Q92878 1312 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 LPXNO60711 386 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 KRT15P19012 456 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 PPP2R5EQ16537 467 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 HS1BP3Q53T59 392 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 ESR2Q92731 530 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 ST5P78524 1137 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 NXNQ6DKJ4 435 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 PALM2Q8IXS6 379 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 TEX12Q9BXU0 123 aa19.58■□□□□ 0.72
SMAD4-201ENST00000342988 DCAF17Q5H9S7 520 aaPredicted RBP19.57■□□□□ 0.72
SMAD4-201ENST00000342988 GNA11P29992 359 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 KRT9P35527 623 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 KIFC3Q9BVG8 833 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 KLHL14Q9P2G3 628 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 CALUO43852 315 aaPredicted RBP19.57■□□□□ 0.72
SMAD4-201ENST00000342988 CTAGE3PQ8IX95 158 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 EFHD1Q9BUP0 239 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 LONP1P36776 959 aaKnown RBP19.57■□□□□ 0.72
SMAD4-201ENST00000342988 OGFOD1Q8N543 542 aa19.57■□□□□ 0.72
SMAD4-201ENST00000342988 KRT12Q99456 494 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 NUTM1Q86Y26 1132 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 MYH11P35749 1972 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 TNPO1Q92973 898 aaKnown RBP19.56■□□□□ 0.72
SMAD4-201ENST00000342988 EEF1DP29692 281 aaKnown RBP19.56■□□□□ 0.72
SMAD4-201ENST00000342988 TRIM42Q8IWZ5 723 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 RRP36Q96EU6 259 aaKnown RBP19.56■□□□□ 0.72
SMAD4-201ENST00000342988 IWS1Q96ST2 819 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 CDV3Q9UKY7 258 aaKnown RBP19.56■□□□□ 0.72
SMAD4-201ENST00000342988 ZBTB43O43298 467 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 NAPAP54920 295 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 RABEP2Q9H5N1 569 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 SCOCQ9UIL1 159 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 STK38LQ9Y2H1 464 aa19.56■□□□□ 0.72
SMAD4-201ENST00000342988 P4HA1P13674 534 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 KRT2P35908 639 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 TAF11Q15544 211 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 KLHL40Q2TBA0 621 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 LZTFL1Q9NQ48 299 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 PNMA2Q9UL42 364 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 ASIC3Q9UHC3 531 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 RASIP1Q5U651 963 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 KRT79Q5XKE5 535 aa19.55■□□□□ 0.72
SMAD4-201ENST00000342988 S100BP04271 92 aaPredicted RBP19.55■□□□□ 0.72
SMAD4-201ENST00000342988 KRT8P05787 483 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms