RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 BLZF1Q9H2G9 400 aa9.46□□□□□ -0.9
HPS4-201ENST00000336873 PUF60Q9UHX1 559 aaKnown RBP9.46□□□□□ -0.9
HPS4-201ENST00000336873 MCAMP43121 646 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 HELLSQ9NRZ9 838 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 AATFQ9NY61 560 aaKnown RBP eCLIP9.45□□□□□ -0.9
HPS4-201ENST00000336873 CTAGE5O15320 804 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 FOXN1O15353 648 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 RESTQ13127 1097 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 PIGBQ92521 554 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 DRC1Q96MC2 740 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 BRMS1Q9HCU9 246 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 USP31Q70CQ4 1352 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 SMTNL1A8MU46 457 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 PFKFB2O60825 505 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 CAVIN4Q5BKX8 364 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 IQCA1Q86XH1 822 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 SMARCE1Q969G3 411 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 NOL10Q9BSC4 688 aaKnown RBP9.45□□□□□ -0.9
HPS4-201ENST00000336873 FANCLQ9NW38 375 aa9.45□□□□□ -0.9
HPS4-201ENST00000336873 TNNT3P45378 269 aaPredicted RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 ARHGAP29Q52LW3 1261 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 CCDC12Q8WUD4 166 aaPredicted RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 SSH2Q76I76 1423 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 WTIPA6NIX2 430 aaPredicted RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 PDE6AP16499 860 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 FANCCQ00597 558 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 MCM6Q14566 821 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 KIF4BQ2VIQ3 1234 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 ZMYM1Q5SVZ6 1142 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 IFIT1BQ5T764 474 aaKnown RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 DZIP1Q86YF9 867 aaKnown RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 FBXO18Q8NFZ0 1043 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 GDAP1L1Q96MZ0 367 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 NUP88Q99567 741 aaPredicted RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 PLEKHA4Q9H4M7 779 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 GNL3LQ9NVN8 582 aaKnown RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 KIAA1468Q9P260 1216 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 KCNH3Q9ULD8 1083 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 DLC1Q96QB1 1528 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 PCDH11XQ9BZA7 1347 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 PCDH11YQ9BZA8 1340 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 GTF2F1P35269 517 aaKnown RBP eCLIP9.44□□□□□ -0.9
HPS4-201ENST00000336873 MATR3P43243 847 aaKnown RBP eCLIP9.44□□□□□ -0.9
HPS4-201ENST00000336873 MTX1Q13505 466 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 ATG9AQ7Z3C6 839 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 LRRC8AQ8IWT6 810 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 CTCFLQ8NI51 663 aaPredicted RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 TANGO6Q9C0B7 1094 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 VPS16Q9H269 839 aa9.44□□□□□ -0.9
HPS4-201ENST00000336873 PIH1D3Q9NQM4 214 aaKnown RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 SAP30BPQ9UHR5 308 aaKnown RBP9.44□□□□□ -0.9
HPS4-201ENST00000336873 IDEP14735 1019 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 NGLY1Q96IV0 654 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 ZSWIM5Q9P217 1185 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 NFE2L3Q9Y4A8 694 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 CARMIL3Q8ND23 1372 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 SMIM22K7EJ46 135 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 IPO7O95373 1038 aaKnown RBP9.43□□□□□ -0.9
HPS4-201ENST00000336873 ZFYP08048 801 aaPredicted RBP9.43□□□□□ -0.9
HPS4-201ENST00000336873 DDB1Q16531 1140 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 GPR101Q96P66 508 aaPredicted RBP9.43□□□□□ -0.9
HPS4-201ENST00000336873 MCM9Q9NXL9 1143 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 SERTAD1Q9UHV2 236 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 PCDHA5Q9Y5H7 936 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 ZNF609O15014 1411 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 KIF28PB7ZC32 967 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 N4BP3O15049 544 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 DYNLL1P63167 89 aaKnown RBP9.43□□□□□ -0.9
HPS4-201ENST00000336873 FILIP1LQ4L180 1135 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 NAA16Q6N069 864 aaPredicted RBP9.43□□□□□ -0.9
HPS4-201ENST00000336873 SPATA5Q8NB90 893 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 ANKRD20A12PQ8NF67 263 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 CAGE1Q8TC20 777 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 RASGRP4Q8TDF6 673 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 CPVLQ9H3G5 476 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 ANKARQ7Z5J8 1434 aa9.43□□□□□ -0.9
HPS4-201ENST00000336873 ZNF335Q9H4Z2 1342 aaPredicted RBP9.43□□□□□ -0.9
HPS4-201ENST00000336873 RBM5P52756 815 aaKnown RBP eCLIP9.42□□□□□ -0.9
HPS4-201ENST00000336873 FOXO4P98177 505 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 PIK3AP1Q6ZUJ8 805 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 CYB5R4Q7L1T6 521 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 CATIPQ7Z7H3 387 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 TBC1D10CQ8IV04 446 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 C8orf37Q96NL8 207 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 CARD6Q9BX69 1037 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 NRKQ7Z2Y5 1582 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 MPHOSPH10O00566 681 aaKnown RBP9.42□□□□□ -0.9
HPS4-201ENST00000336873 EPB41L2O43491 1005 aaKnown RBP9.42□□□□□ -0.9
HPS4-201ENST00000336873 CTDNEP1O95476 244 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 CDC27P30260 824 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 EIF5P55010 431 aaKnown RBP9.42□□□□□ -0.9
HPS4-201ENST00000336873 PICALMQ13492 652 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 IFNL3Q8IZI9 196 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 DSCC1Q9BVC3 393 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 CCDC94Q9BW85 323 aaPredicted RBP9.42□□□□□ -0.9
HPS4-201ENST00000336873 USP17L12C9JPN9 530 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 USP17L21D6R901 530 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 GOLGA8HP0CJ92 632 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 GUCY1A2P33402 732 aa9.42□□□□□ -0.9
HPS4-201ENST00000336873 RRAGBQ5VZM2 374 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms