RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 VPS16Q9H269 839 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 BICC1Q9H694 974 aaKnown RBP14.17□□□□□ -0.14
SDC3-201ENST00000336798 UFL1O94874 794 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 TEX11Q8IYF3 940 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 TRIM31Q9BZY9 425 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 TRIM6Q9C030 488 aaPredicted RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 STX10O60499 249 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 TOM1O60784 492 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 ATXN8OSP0DMR3 200 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 SPOUT1Q5T280 376 aaKnown RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 SV2BQ7L1I2 683 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 PRIMPOLQ96LW4 560 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 GPHNQ9NQX3 736 aaPredicted RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 TTC36A6NLP5 189 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 EPB41P11171 864 aaKnown RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 GNA11P29992 359 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 ATP8B2P98198 1209 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 KIAA1524Q8TCG1 905 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 ARMT1Q9H993 441 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 VIMP08670 466 aaKnown RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 CALCOCO2Q13137 446 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 PIK3AP1Q6ZUJ8 805 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 RBM17Q96I25 401 aaKnown RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 NOC4LQ9BVI4 516 aaKnown RBP14.16□□□□□ -0.14
SDC3-201ENST00000336798 TMOD4Q9NZQ9 345 aa14.16□□□□□ -0.14
SDC3-201ENST00000336798 B4E1Z4 1266 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 PRIM1P49642 420 aaKnown RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 NCAPH2Q6IBW4 605 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 MTRF1LQ9UGC7 380 aaKnown RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 TRPC3Q13507 836 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 MTHFSDQ2M296 383 aaKnown RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 CCDC122Q5T0U0 273 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 ANO3Q9BYT9 981 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 NOP56O00567 594 aaKnown RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 ARID4AP29374 1257 aaPredicted RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 TCP10Q12799 353 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 AKAP4Q5JQC9 854 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 RBM28Q9NW13 759 aaKnown RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 PCDHB15Q9Y5E8 787 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 IL2RBP14784 551 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 GNAT2P19087 354 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 TNFAIP3P21580 790 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 KRT19P08727 400 aa14.15□□□□□ -0.14
SDC3-201ENST00000336798 LUC7L2Q9Y383 392 aaKnown RBP14.15□□□□□ -0.14
SDC3-201ENST00000336798 TXKP42681 527 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 PDE4DQ08499 809 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 NBPF14Q5TI25 921 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 CPXCR1Q8N123 301 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 MRPL50Q8N5N7 158 aaKnown RBP14.14□□□□□ -0.15
SDC3-201ENST00000336798 PLEKHA4Q9H4M7 779 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 PLCG2P16885 1265 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 UTP14CQ5TAP6 766 aaKnown RBP14.14□□□□□ -0.15
SDC3-201ENST00000336798 MTUS1Q9ULD2 1270 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 SAMD15Q9P1V8 674 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 RRAGDQ9NQL2 400 aaPredicted RBP14.14□□□□□ -0.15
SDC3-201ENST00000336798 PRDM1O75626 825 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 SATB1Q01826 763 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 VPS52Q8N1B4 723 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 FAM89AQ96GI7 184 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 EYA3Q99504 573 aa14.14□□□□□ -0.15
SDC3-201ENST00000336798 TRAPPC3LQ5T215 181 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 CAVIN2O95810 425 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 STRN3Q13033 797 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 SETDB1Q15047 1291 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 FMNL3Q8IVF7 1028 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 A0A1B0GUL7 405 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 IVLP07476 585 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 MKRN1Q9UHC7 482 aaKnown RBP14.13□□□□□ -0.15
SDC3-201ENST00000336798 AFG3L2Q9Y4W6 797 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 SLC8A3P57103 927 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 CEP85LQ5SZL2 805 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 BEND3Q5T5X7 828 aa14.13□□□□□ -0.15
SDC3-201ENST00000336798 EIF4A2Q14240 407 aaKnown RBP14.12□□□□□ -0.15
SDC3-201ENST00000336798 RUFY3Q7L099 469 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 GTF3C6Q969F1 213 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 TIAM1Q13009 1591 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 PPIP5K1Q6PFW1 1433 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 GBP6Q6ZN66 633 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 INTS8Q75QN2 995 aaKnown RBP14.12□□□□□ -0.15
SDC3-201ENST00000336798 KIFAP3Q92845 792 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 PSMB7Q99436 277 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 AATFQ9NY61 560 aaKnown RBP eCLIP14.12□□□□□ -0.15
SDC3-201ENST00000336798 WDR7Q9Y4E6 1490 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 TNNC1P63316 161 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 TAF5LO75529 589 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 RPL13P26373 211 aaKnown RBP14.12□□□□□ -0.15
SDC3-201ENST00000336798 ALDH3A1P30838 453 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 VAV2P52735 878 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 DYMQ7RTS9 669 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 ZNF594Q96JF6 807 aaPredicted RBP14.12□□□□□ -0.15
SDC3-201ENST00000336798 ANKRD2Q9GZV1 360 aa14.12□□□□□ -0.15
SDC3-201ENST00000336798 TIMM10P62072 90 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 TSPYL6Q8N831 410 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 ANKRD44Q8N8A2 993 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 IQUBQ8NA54 791 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 XRCC6P12956 609 aaKnown RBP eCLIP14.11□□□□□ -0.15
SDC3-201ENST00000336798 SMTNP53814 917 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 KLHDC4Q8TBB5 520 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 SYNJ1O43426 1573 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 EFCAB5A4FU69 1503 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms