RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 IKBKBO14920 756 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 HSPD1P10809 573 aaKnown RBP15.78■□□□□ 0.12
SYNE3-201ENST00000334258 PNOCQ13519 176 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 KARSQ15046 597 aaKnown RBP15.78■□□□□ 0.12
SYNE3-201ENST00000334258 FBXO18Q8NFZ0 1043 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 COPRSQ9NQ92 184 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 KLF18A0A0U1RQI7 1052 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 PTPN12Q05209 780 aaKnown RBP15.78■□□□□ 0.12
SYNE3-201ENST00000334258 MCM6Q14566 821 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 RASSF4Q9H2L5 321 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 SLC52A2Q9HAB3 445 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 PAG1Q9NWQ8 432 aa15.78■□□□□ 0.12
SYNE3-201ENST00000334258 CMA1P23946 247 aa15.77■□□□□ 0.12
SYNE3-201ENST00000334258 CCDC12Q8WUD4 166 aaPredicted RBP15.77■□□□□ 0.12
SYNE3-201ENST00000334258 UTYO14607 1347 aa15.77■□□□□ 0.11
SYNE3-201ENST00000334258 VWA3AA6NCI4 1184 aa15.77■□□□□ 0.11
SYNE3-201ENST00000334258 TIMM10P62072 90 aa15.77■□□□□ 0.11
SYNE3-201ENST00000334258 VSTM4Q8IW00 320 aa15.77■□□□□ 0.11
SYNE3-201ENST00000334258 RSPH14Q9UHP6 348 aa15.77■□□□□ 0.11
SYNE3-201ENST00000334258 ADKP55263 362 aaKnown RBP15.76■□□□□ 0.11
SYNE3-201ENST00000334258 BRAPQ7Z569 592 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 DSCC1Q9BVC3 393 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 LRRC37A3O60309 1634 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 SALL1Q9NSC2 1324 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 WASHC4Q2M389 1173 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 GOLGA1Q92805 767 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 DESI2Q9BSY9 194 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 BCCIPQ9P287 314 aaKnown RBP eCLIP15.76■□□□□ 0.11
SYNE3-201ENST00000334258 ADAM21Q9UKJ8 722 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 WDHD1O75717 1129 aaPredicted RBP15.76■□□□□ 0.11
SYNE3-201ENST00000334258 HELLSQ9NRZ9 838 aa15.76■□□□□ 0.11
SYNE3-201ENST00000334258 A0A087WZG4 1122 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 CLGNO14967 610 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 TRIM66O15016 1216 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 ZCRB1Q8TBF4 217 aaKnown RBP15.75■□□□□ 0.11
SYNE3-201ENST00000334258 GOLGA6L9A6NEM1 432 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 MAP3K9P80192 1104 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 LONRF2Q1L5Z9 754 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 DHX58Q96C10 678 aa15.75■□□□□ 0.11
SYNE3-201ENST00000334258 KIF28PB7ZC32 967 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 A1BGP04217 495 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 FKBP4Q02790 459 aaKnown RBP eCLIP15.74■□□□□ 0.11
SYNE3-201ENST00000334258 AXDND1Q5T1B0 1012 aaPredicted RBP15.74■□□□□ 0.11
SYNE3-201ENST00000334258 LEKR1Q6ZMV7 388 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 ANKRD13DQ6ZTN6 518 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 RALYLQ86SE5 291 aaKnown RBP15.74■□□□□ 0.11
SYNE3-201ENST00000334258 JMYQ8N9B5 988 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 CNNM3Q8NE01 707 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 RABGGTAQ92696 567 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 VPS18Q9P253 973 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 PUF60Q9UHX1 559 aaKnown RBP15.74■□□□□ 0.11
SYNE3-201ENST00000334258 SH3TC1Q8TE82 1336 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 MYO1CO00159 1063 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 PRC1O43663 620 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 MMP14P50281 582 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 MUM1L1Q5H9M0 696 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 TOGARAM2Q6ZUX3 1019 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 METTL22Q9BUU2 404 aaPredicted RBP15.74■□□□□ 0.11
SYNE3-201ENST00000334258 AGXT2Q9BYV1 514 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 HSD3B7Q9H2F3 369 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 LMBR1LQ6UX01 489 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 FCHSD1Q86WN1 690 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 CCDC85AQ96PX6 553 aaPredicted RBP15.74■□□□□ 0.11
SYNE3-201ENST00000334258 LZTFL1Q9NQ48 299 aa15.74■□□□□ 0.11
SYNE3-201ENST00000334258 NEDD4P46934 1319 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 IFIT1P09914 478 aaKnown RBP15.73■□□□□ 0.11
SYNE3-201ENST00000334258 CLIC6Q96NY7 704 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 FUT8Q9BYC5 575 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 MRFAP1Q9Y605 127 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 MROH7-TTC4A0A0A0MT08 1334 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 CCDC102BQ68D86 513 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 LCMT1Q9UIC8 334 aa15.73■□□□□ 0.11
SYNE3-201ENST00000334258 KIF23Q02241 960 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 SLC39A14Q15043 492 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 PDIA6Q15084 440 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 IMMTQ16891 758 aaKnown RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 STK11IPQ8N1F8 1099 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 IRX2Q9BZI1 471 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 KDM6AO15550 1401 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 SRCAPQ6ZRS2 3230 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 TXLNAP40222 546 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 ZMYM1Q5SVZ6 1142 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 AIFM3Q96NN9 605 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 PCDHA5Q9Y5H7 936 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 NCAPD2Q15021 1401 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 MAST3O60307 1309 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 SOS2Q07890 1332 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 RNF113AO15541 343 aaKnown RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 RFX5P48382 616 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-201ENST00000334258 JAKMIP3Q5VZ66 844 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 GOLGA5Q8TBA6 731 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 EXOC4Q96A65 974 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 ZBTB3Q9H5J0 574 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 PDE11AQ9HCR9 933 aa15.72■□□□□ 0.11
SYNE3-201ENST00000334258 UTRNP46939 3433 aa15.71■□□□□ 0.11
SYNE3-201ENST00000334258 CHMP4BP1P59074 171 aa15.71■□□□□ 0.11
SYNE3-201ENST00000334258 SPECC1Q5M775 1068 aa15.71■□□□□ 0.11
SYNE3-201ENST00000334258 CPLX3Q8WVH0 158 aa15.71■□□□□ 0.11
SYNE3-201ENST00000334258 STRCQ7RTU9 1775 aa15.71■□□□□ 0.11
SYNE3-201ENST00000334258 N4BP2Q86UW6 1770 aaPredicted RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms