RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PANK2Q9BZ23 570 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 CABP1Q9NZU7 370 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 PFDN1O60925 122 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 IGSF22Q8N9C0 903 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 GSDMBQ8TAX9 411 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 EPS15L1Q9UBC2 864 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 TROVE2P10155 538 aaKnown RBP eCLIP15.93■□□□□ 0.14
COL7A1-201ENST00000328333 PHBP35232 272 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 NBPF6Q5VWK0 638 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 NBPF4Q96M43 638 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 PFDN4Q9NQP4 134 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 TSPY2A6NKD2 308 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 GUCY1B3Q02153 619 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 PPP1R1BQ9UD71 204 aaPredicted RBP15.93■□□□□ 0.14
COL7A1-201ENST00000328333 ZMYM4Q5VZL5 1548 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 ATP8B1O43520 1251 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 EPB41P11171 864 aaKnown RBP15.92■□□□□ 0.14
COL7A1-201ENST00000328333 SDCCAG3Q96C92 435 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 STAG1Q8WVM7 1258 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 CACYBPQ9HB71 228 aaKnown RBP15.92■□□□□ 0.14
COL7A1-201ENST00000328333 ESCO1Q5FWF5 840 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 ESYT1Q9BSJ8 1104 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 E7EVH7 732 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 AFMP43652 599 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 NUP160Q12769 1436 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 OAS2P29728 719 aaKnown RBP15.92■□□□□ 0.14
COL7A1-201ENST00000328333 DNM1Q05193 864 aaKnown RBP15.92■□□□□ 0.14
COL7A1-201ENST00000328333 MCMDC2Q4G0Z9 681 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 TMEM132EQ6IEE7 984 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 AOX1Q06278 1338 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 ZPR1O75312 459 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 TOM1L2Q6ZVM7 507 aa15.92■□□□□ 0.14
COL7A1-201ENST00000328333 SH3BP5O60239 455 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 SLC8A3P57103 927 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 MMRN2Q9H8L6 949 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 VEZTQ9HBM0 779 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 ARHGAP4P98171 946 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 ZNF830Q96NB3 372 aaPredicted RBP15.91■□□□□ 0.14
COL7A1-201ENST00000328333 EFCAB8A8MWE9 144 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 RNF8O76064 485 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 TRIM58Q8NG06 486 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 SECISBP2LQ93073 1101 aaKnown RBP15.91■□□□□ 0.14
COL7A1-201ENST00000328333 FAM13AO94988 1023 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 ZC4H2Q9NQZ6 224 aa15.91■□□□□ 0.14
COL7A1-201ENST00000328333 HHATQ5VTY9 493 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 NRBF2Q96F24 287 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 RUNDC3BQ96NL0 473 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 CCDC61Q9Y6R9 512 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 ELF2Q15723 593 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 TMEM87AQ8NBN3 555 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 FAF1Q9UNN5 650 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-201ENST00000328333 PDE1CQ14123 709 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-201ENST00000328333 SLC9C1Q4G0N8 1177 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 CCDC152Q4G0S7 254 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 RUFY3Q7L099 469 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 CERS3Q8IU89 383 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 TLDC2A0PJX2 215 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 SPDYE3A6NKU9 549 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 TCHHQ07283 1943 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 PLCG2P16885 1265 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 CCDC65Q8IXS2 484 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 PPP1R9AQ9ULJ8 1098 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 SDSP20132 328 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 KLF18A0A0U1RQI7 1052 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 STX10O60499 249 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 DMTNQ08495 405 aa15.9■□□□□ 0.14
COL7A1-201ENST00000328333 KRT79Q5XKE5 535 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 THEMISQ8N1K5 641 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 TRIM37O94972 964 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 MYH9P35579 1960 aaKnown RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 RIOK3O14730 519 aaKnown RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 EFCC1Q9HA90 598 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 SPOPO43791 374 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 ERCC3P19447 782 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 ZKSCAN8Q15776 578 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 CCDC124Q96CT7 223 aaKnown RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 PSMD1Q99460 953 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 CENPKQ9BS16 269 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 CCDC68Q9H2F9 335 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 RGS16O15492 202 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 SMARCA5O60264 1052 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-201ENST00000328333 ESRRGP62508 458 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 NUTM2GQ5VZR2 741 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 MLKLQ8NB16 471 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 AGTPBP1Q9UPW5 1226 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 ZFYVE9O95405 1425 aa15.89■□□□□ 0.13
COL7A1-201ENST00000328333 SMIM23A6NLE4 172 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 ZNF500O60304 480 aaPredicted RBP15.88■□□□□ 0.13
COL7A1-201ENST00000328333 TYW1Q9NV66 732 aaKnown RBP15.88■□□□□ 0.13
COL7A1-201ENST00000328333 ZRANB1Q9UGI0 708 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 DTHD1Q6ZMT9 781 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 HSPA8P11142 646 aaKnown RBP15.88■□□□□ 0.13
COL7A1-201ENST00000328333 ZNF622Q969S3 477 aaKnown RBP eCLIP15.88■□□□□ 0.13
COL7A1-201ENST00000328333 TSPY3P0CV98 308 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 TSPY8P0CW00 308 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 ANKRD12Q6UB98 2062 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 PPM1FP49593 454 aaPredicted RBP15.88■□□□□ 0.13
COL7A1-201ENST00000328333 KIF1CO43896 1103 aaKnown RBP15.88■□□□□ 0.13
COL7A1-201ENST00000328333 OPHN1O60890 802 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms