RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	CAGE1	Q8TC20	777 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	ZKSCAN5	Q9Y2L8	839 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	MROH1	Q8NDA8	1641 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	GNAT2	P19087	354 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	PDIA3	P30101	505 aa	Known RBP	13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	UBASH3A	P57075	661 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	SKIDA1	Q1XH10	827 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	DEF6	Q9H4E7	631 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	ERBB4	Q15303	1308 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	NOM1	Q5C9Z4	860 aa	Known RBP	13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	ANO1	Q5XXA6	986 aa		13.57	□□□□□ -0.24
DDR1-223	ENST00000324771	ZC3H13	Q5T200	1668 aa	Known RBP	13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	PREX1	Q8TCU6	1659 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	SKIL	P12757	684 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	AKNAD1	Q5T1N1	836 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	IFNK	Q9P0W0	207 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	MROH5	Q6ZUA9	1318 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	ERCC3	P19447	782 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	CLCN1	P35523	988 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	GPIHBP1	Q8IV16	184 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	PIH1D3	Q9NQM4	214 aa	Known RBP	13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	TRIM37	O94972	964 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	MCAM	P43121	646 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	ZNF445	P59923	1031 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	CUL4A	Q13619	759 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	VEZT	Q9HBM0	779 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	GPCPD1	Q9NPB8	672 aa		13.56	□□□□□ -0.24
DDR1-223	ENST00000324771	MTX1	Q13505	466 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	FEZ1	Q99689	392 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	MAP2	P11137	1827 aa	Known RBP	13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	BTBD18	B2RXH4	712 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	GTF2I	P78347	998 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	PIK3AP1	Q6ZUJ8	805 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	ANKRD2	Q9GZV1	360 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	TCP11L1	Q9NUJ3	509 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	ZDHHC9	Q9Y397	364 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	POLR1A	O95602	1720 aa	Predicted RBP	13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	PATL2	C9JE40	543 aa	Known RBP	13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	TNNI2	P48788	182 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	TFAP4	Q01664	338 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	RASGRF1	Q13972	1273 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	UVSSA	Q2YD98	709 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	RRAGB	Q5VZM2	374 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	SLF2	Q8IX21	1173 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	CBX8	Q9HC52	389 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	RGS12	O14924	1447 aa		13.55	□□□□□ -0.24
DDR1-223	ENST00000324771	EPB41L2	O43491	1005 aa	Known RBP	13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	TNNT3	P45378	269 aa	Predicted RBP	13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	FAM160A1	Q05DH4	1040 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	PDIA6	Q15084	440 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	ARHGAP29	Q52LW3	1261 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	DIP2B	Q9P265	1576 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	ATP10D	Q9P241	1426 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	HLA-DOA	P06340	250 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	CCDC178	Q5BJE1	867 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	CLIC6	Q96NY7	704 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	POLR2D	O15514	142 aa	Known RBP	13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	GOLGA8H	P0CJ92	632 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	DOK7	Q18PE1	504 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	TMEM87B	Q96K49	555 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	TMEM131L	A2VDJ0	1609 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	N4BP3	O15049	544 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	PPARA	Q07869	468 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	PTPN21	Q16825	1174 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	PDCL3	Q9H2J4	239 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	DNAJC5	Q9H3Z4	198 aa		13.54	□□□□□ -0.24
DDR1-223	ENST00000324771	SCNN1D	P51172	638 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	GSTO1	P78417	241 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	LETM2	Q2VYF4	491 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	LCORL	Q8N3X6	602 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	GOLGA6L1	Q8N7Z2	621 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	NUP88	Q99567	741 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-223	ENST00000324771		A0A0G2JLW4	131 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	ECM2	O94769	699 aa	Predicted RBP	13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	APBA3	O96018	575 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	MYSM1	Q5VVJ2	828 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	KAZALD1	Q96I82	304 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	GGA1	Q9UJY5	639 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	ZNF202	O95125	648 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	ZYX	Q15942	572 aa	Known RBP	13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	ZNF654	Q8IZM8	581 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	EEF2KMT	Q96G04	330 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	AGL	P35573	1532 aa		13.53	□□□□□ -0.24
DDR1-223	ENST00000324771	NRK	Q7Z2Y5	1582 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	SSH2	Q76I76	1423 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	PFKFB2	O60825	505 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	MFSD14B	Q5SR56	506 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	BRAP	Q7Z569	592 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	TSC1	Q92574	1164 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	PARP3	Q9Y6F1	533 aa		13.52	□□□□□ -0.24
DDR1-223	ENST00000324771	STAT6	P42226	847 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	FOXO4	P98177	505 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	DIXDC1	Q155Q3	683 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	ZNF827	Q17R98	1081 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	KRI1	Q8N9T8	703 aa	Known RBP	13.52	□□□□□ -0.25

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