RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 FAM169AQ9Y6X4 670 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 CTNNA1P35221 906 aaKnown RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 PDZD8Q8NEN9 1154 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 RBM8AQ9Y5S9 174 aaKnown RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 KRT15P19012 456 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 SLC8A1P32418 973 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 ITIH3Q06033 890 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 SPATS2Q86XZ4 545 aaKnown RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 ADKP55263 362 aaKnown RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 TSPY2A6NKD2 308 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 MYL5Q02045 173 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 CBX8Q9HC52 389 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 MAP3K2Q9Y2U5 619 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 HECW1Q76N89 1606 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 SMC5Q8IY18 1101 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 NCAPD3P42695 1498 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 BCAS4Q8TDM0 211 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 ASIC3Q9UHC3 531 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 SNX21Q969T3 373 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 MTUS1Q9ULD2 1270 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 EIF4E1BA6NMX2 242 aaKnown RBP9.75□□□□□ -0.85
USF3-201ENST00000316407 ZBTB43O43298 467 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 SPAG1Q07617 926 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 WTAPQ15007 396 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 CCDC14Q49A88 953 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 IFIT1BQ5T764 474 aaKnown RBP9.75□□□□□ -0.85
USF3-201ENST00000316407 TTC21AQ8NDW8 1320 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 ARHGAP24Q8N264 748 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 NOX5Q96PH1 765 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 LRRC23Q53EV4 343 aaPredicted RBP9.75□□□□□ -0.85
USF3-201ENST00000316407 SLF1Q9BQI6 1058 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 GIGYF1O75420 1035 aaPredicted RBP9.75□□□□□ -0.85
USF3-201ENST00000316407 PAK2Q13177 524 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 STXBP4Q6ZWJ1 553 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 FNBP4Q8N3X1 1017 aaPredicted RBP9.75□□□□□ -0.85
USF3-201ENST00000316407 STX2P32856 288 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 TRIM35Q9UPQ4 493 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 ATAD2Q6PL18 1390 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 RTN1Q16799 776 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 LOC102724159A0A0B4J2E5 919 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 PWP2Q15269 919 aaKnown RBP9.75□□□□□ -0.85
USF3-201ENST00000316407 LRMPQ12912 555 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 PPP1R9AQ9ULJ8 1098 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 PPFIA2O75334 1257 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 KIAA1107Q9UPP5 1409 aa9.75□□□□□ -0.85
USF3-201ENST00000316407 BICC1Q9H694 974 aaKnown RBP9.74□□□□□ -0.85
USF3-201ENST00000316407 SLC5A1P13866 664 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 hCG_2014768A0A024R1R8 64 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 FANCCQ00597 558 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 RAD51AP2Q09MP3 1159 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 PIP4K2CQ8TBX8 421 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 RASSF2P50749 326 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 ZRANB1Q9UGI0 708 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 CA8P35219 290 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 EFCC1Q9HA90 598 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 UBL4BQ8N7F7 174 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 ZBTB21Q9ULJ3 1066 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 PDE1AP54750 535 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 BIRC2Q13490 618 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 ERMNQ8TAM6 284 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 SIRT1Q96EB6 747 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 JRKLQ9Y4A0 524 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 POLR2DO15514 142 aaKnown RBP9.74□□□□□ -0.85
USF3-201ENST00000316407 GAS8O95995 478 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 TUBBP07437 444 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 NOC4LQ9BVI4 516 aaKnown RBP9.74□□□□□ -0.85
USF3-201ENST00000316407 RGS16O15492 202 aaPredicted RBP9.74□□□□□ -0.85
USF3-201ENST00000316407 NXNQ6DKJ4 435 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 CEP104O60308 925 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 FAM13AO94988 1023 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 EHBP1L1Q8N3D4 1523 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 C9orf84Q5VXU9 1444 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 NMIQ13287 307 aaPredicted RBP9.74□□□□□ -0.85
USF3-201ENST00000316407 MPRIPQ6WCQ1 1025 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 KIFC2Q96AC6 838 aa9.74□□□□□ -0.85
USF3-201ENST00000316407 TRIM75PA6NK02 468 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 RUFY4Q6ZNE9 571 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 CCT6BQ92526 530 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 MEIS3Q99687 375 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.73□□□□□ -0.85
USF3-201ENST00000316407 SECISBP2LQ93073 1101 aaKnown RBP9.73□□□□□ -0.85
USF3-201ENST00000316407 PLCB1Q9NQ66 1216 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 VCX3AQ9NNX9 186 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 TTF2Q9UNY4 1162 aaKnown RBP9.73□□□□□ -0.85
USF3-201ENST00000316407 PDE4BQ07343 736 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 CCDC105Q8IYK2 499 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 IFIH1Q9BYX4 1025 aaKnown RBP9.73□□□□□ -0.85
USF3-201ENST00000316407 ZMYND10O75800 440 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 CAPN12Q6ZSI9 719 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 CCDC141Q6ZP82 1450 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 ATP5J2-PTCD1G3V325 749 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 BRD2P25440 801 aaKnown RBP9.73□□□□□ -0.85
USF3-201ENST00000316407 PTPDC1A2A3K4 754 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 FAM83GA6ND36 823 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 FAM133BQ5BKY9 247 aaKnown RBP9.73□□□□□ -0.85
USF3-201ENST00000316407 APOEP02649 317 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 ANKRD65E5RJM6 399 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 MGEA5O60502 916 aa9.73□□□□□ -0.85
USF3-201ENST00000316407 NUTM2AQ8IVF1 878 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms