RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ATP2B3Q16720 1220 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 B4GALNT4Q76KP1 1039 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 STX12Q86Y82 276 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 NLRP4Q96MN2 994 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 TRIM56Q9BRZ2 755 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 MAFFQ9ULX9 164 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 IPO5O00410 1097 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 VCAM1P19320 739 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 CASTP20810 708 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 FAM129BQ96TA1 746 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 MLPHQ9BV36 600 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 DNAJC17Q9NVM6 304 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 MPP6Q9NZW5 540 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 KIF17Q9P2E2 1029 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 RASSF10A6NK89 507 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 GNGT2O14610 69 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 EVCP57679 992 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 GNG11P61952 73 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 TAOK1Q7L7X3 1001 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 C11orf74Q86VG3 221 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 MIS12Q9H081 205 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 C9orf78Q9NZ63 289 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 USP5P45974 858 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 NEMFO60524 1076 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 PSMA5P28066 241 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 BTN3A2P78410 334 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 TBL3Q12788 808 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 TRMT10CQ7L0Y3 403 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 TAF8Q7Z7C8 310 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 SYCE3A1L190 88 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 EIF3CLB5ME19 914 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 RAB14P61106 215 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 EP400NLQ6ZTU2 488 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 HDXQ7Z353 690 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 RMI1Q9H9A7 625 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 PARVAQ9NVD7 372 aa8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 RRP7AQ9Y3A4 280 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-201ENST00000313860 MAN1A1P33908 653 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 DENND2CQ68D51 928 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 SYCP3Q8IZU3 236 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 PARD3BQ8TEW8 1205 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 SPATA32Q96LK8 384 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 ATP11BQ9Y2G3 1177 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 CAPN7Q9Y6W3 813 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 NDUFAB1O14561 156 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 P4HA2O15460 535 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 CHGBP05060 677 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 AKR1D1P51857 326 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 KLHL24Q6TFL4 600 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 TMC6Q7Z403 805 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 ST13P4Q8IZP2 240 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 DDAH1O94760 285 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 FBXW4P57775 412 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 OCA2Q04671 838 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 EIF2S3LQ2VIR3 472 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 AFAP1L2Q8N4X5 818 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 DCDC2Q9UHG0 476 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 CDV3Q9UKY7 258 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 APOBEC2Q9Y235 224 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 YWHAEP62258 255 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 LAMC2Q13753 1193 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 GATAD2AQ86YP4 633 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 PLIN2Q99541 437 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 NAP1L4Q99733 375 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 OSBPL10Q9BXB5 764 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 INTS13Q9NVM9 706 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 PPP2R3BQ9Y5P8 575 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 HIP1O00291 1037 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 SKILP12757 684 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 POLR2EP19388 210 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 GOLGA8FQ08AF8 430 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 GOLGA8DPQ0D2H9 430 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 BTN2A2Q8WVV5 523 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 KIFC3Q9BVG8 833 aa8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 API5Q9BZZ5 524 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 FHDC1Q9C0D6 1143 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 LARSQ9P2J5 1176 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-201ENST00000313860 SUPT3HO75486 399 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 RPS6KA2Q15349 733 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 CDH24Q86UP0 819 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 BBOF1Q8ND07 529 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 LRGUKQ96M69 825 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 SMCO3A2RU48 225 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 ARF5P84085 180 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 PPP1R7Q15435 360 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 TSC22D3Q99576 134 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 CUX2O14529 1486 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 H3BRJ5 948 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 G3BP1Q13283 466 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 TTLL12Q14166 644 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 KHDRBS2Q5VWX1 349 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 CCSAPQ6IQ19 270 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 HEATR4Q86WZ0 1026 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 TNIP3Q96KP6 325 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 PLVAPQ9BX97 442 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 VEZTQ9HBM0 779 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 MTERF2Q49AM1 385 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 CFAP61Q8NHU2 1237 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 ENO4A6NNW6 628 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 RSPH10B2B2RC85 870 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms