RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 PRKG1Q13976 671 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 NBPF12Q5TAG4 269 aaPredicted RBP16.29■□□□□ 0.2
VPS28-201ENST00000292510 PAXIP1Q6ZW49 1069 aaPredicted RBP16.29■□□□□ 0.2
VPS28-201ENST00000292510 SLF2Q8IX21 1173 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 C2orf69Q8N8R5 385 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 FAM163AQ96GL9 167 aaPredicted RBP16.29■□□□□ 0.2
VPS28-201ENST00000292510 TMEM39BQ9GZU3 492 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 TMOD2Q9NZR1 351 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 PPP2R3BQ9Y5P8 575 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 SSC5DA1L4H1 1573 aa16.29■□□□□ 0.2
VPS28-201ENST00000292510 MYO5AQ9Y4I1 1855 aaKnown RBP16.29■□□□□ 0.2
VPS28-201ENST00000292510 GOLIM4O00461 696 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 HUNKP57058 714 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 GSTO1P78417 241 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 DEFB115Q30KQ5 88 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 B4GALNT3Q6L9W6 998 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 NAA16Q6N069 864 aaPredicted RBP16.28■□□□□ 0.2
VPS28-201ENST00000292510 ADGRA1Q86SQ6 560 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 ECHDC1Q9NTX5 307 aa16.28■□□□□ 0.2
VPS28-201ENST00000292510 GPR75-ASB3A0A0A6YYF3 556 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 LDHCP07864 332 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 NF2P35240 595 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 TNNI2P48788 182 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 VEGFBP49765 207 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 TCP10Q12799 353 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 GRM1Q13255 1194 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 TTLL12Q14166 644 aaPredicted RBP16.27■□□□□ 0.2
VPS28-201ENST00000292510 CYP4F22Q6NT55 531 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 SMC5Q8IY18 1101 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 MAGEB6Q8N7X4 407 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 TEPSINQ96N21 525 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 PAG1Q9NWQ8 432 aa16.27■□□□□ 0.2
VPS28-201ENST00000292510 MAST2Q6P0Q8 1798 aa16.26■□□□□ 0.19
VPS28-201ENST00000292510 UBE2Q2LH0YL09 131 aa16.26■□□□□ 0.19
VPS28-201ENST00000292510 CYP7A1P22680 504 aa16.26■□□□□ 0.19
VPS28-201ENST00000292510 RHBDL3P58872 404 aa16.26■□□□□ 0.19
VPS28-201ENST00000292510 HAUS7Q99871 368 aa16.26■□□□□ 0.19
VPS28-201ENST00000292510 AATFQ9NY61 560 aaKnown RBP eCLIP16.26■□□□□ 0.196e-6■■■■□ 25.6
VPS28-201ENST00000292510 ZBTB47Q9UFB7 747 aaPredicted RBP16.26■□□□□ 0.19
VPS28-201ENST00000292510 FAM198AQ9UFP1 575 aa16.26■□□□□ 0.19
VPS28-201ENST00000292510 MAP3K12Q12852 859 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 TTF1Q15361 905 aaPredicted RBP16.25■□□□□ 0.19
VPS28-201ENST00000292510 FKBP1CQ5VVH2 108 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 FAM83AQ86UY5 434 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 ZFPM1Q8IX07 1006 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 GPATCH3Q96I76 525 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 DDX4Q9NQI0 724 aaKnown RBP16.25■□□□□ 0.19
VPS28-201ENST00000292510 PAPPA2Q9BXP8 1791 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 RFX7Q2KHR2 1363 aa16.25■□□□□ 0.19
VPS28-201ENST00000292510 DOCK2Q92608 1830 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 SALL3Q9BXA9 1300 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 WDHD1O75717 1129 aaPredicted RBP16.24■□□□□ 0.19
VPS28-201ENST00000292510 MAP4K4O95819 1239 aaPredicted RBP16.24■□□□□ 0.19
VPS28-201ENST00000292510 RGS3P49796 1198 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 DYNLL1P63167 89 aaKnown RBP16.24■□□□□ 0.19
VPS28-201ENST00000292510 FKBP1BP68106 108 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 PICALMQ13492 652 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 SUPT20HL1Q3ZLR7 823 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 MIGA1Q8NAN2 632 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 SH3RF3Q8TEJ3 882 aaPredicted RBP16.24■□□□□ 0.19
VPS28-201ENST00000292510 FAM151AQ8WW52 585 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 CAPNS2Q96L46 248 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 IDI2Q9BXS1 227 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 LNPKQ9C0E8 428 aa16.24■□□□□ 0.19
VPS28-201ENST00000292510 ANGEL1Q9UNK9 670 aaKnown RBP16.24■□□□□ 0.19
VPS28-201ENST00000292510 WDR33Q9C0J8 1336 aaKnown RBP16.23■□□□□ 0.19
VPS28-201ENST00000292510 CHGBP05060 677 aa16.23■□□□□ 0.19
VPS28-201ENST00000292510 PDE6AP16499 860 aa16.23■□□□□ 0.19
VPS28-201ENST00000292510 MX1P20591 662 aa16.23■□□□□ 0.19
VPS28-201ENST00000292510 SLFNL1Q499Z3 407 aa16.23■□□□□ 0.19
VPS28-201ENST00000292510 SLC9C2Q5TAH2 1124 aa16.23■□□□□ 0.19
VPS28-201ENST00000292510 PI4K2BQ8TCG2 481 aa16.23■□□□□ 0.19
VPS28-201ENST00000292510 TTC41PQ6P2S7 1318 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 PPP1R12BO60237 982 aaPredicted RBP16.22■□□□□ 0.19
VPS28-201ENST00000292510 IGSF3O75054 1194 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 AOC2O75106 756 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 USP2O75604 605 aaPredicted RBP16.22■□□□□ 0.19
VPS28-201ENST00000292510 BAG3O95817 575 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 ZNF157P51786 506 aaPredicted RBP16.22■□□□□ 0.19
VPS28-201ENST00000292510 RGMBQ6NW40 437 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 ARMC9Q7Z3E5 817 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 CHD1LQ86WJ1 897 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 TEX11Q8IYF3 940 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 HHIPL1Q96JK4 782 aa16.22■□□□□ 0.19
VPS28-201ENST00000292510 NOL10Q9BSC4 688 aaKnown RBP16.22■□□□□ 0.19
VPS28-201ENST00000292510 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.22■□□□□ 0.19
VPS28-201ENST00000292510 ZNF532Q9HCE3 1301 aa16.21■□□□□ 0.19
VPS28-201ENST00000292510 ENTPD3O75355 529 aa16.21■□□□□ 0.19
VPS28-201ENST00000292510 PPP4CP60510 307 aa16.21■□□□□ 0.19
VPS28-201ENST00000292510 NUCB1Q02818 461 aa16.21■□□□□ 0.19
VPS28-201ENST00000292510 SH3BP5LQ7L8J4 393 aa16.21■□□□□ 0.19
VPS28-201ENST00000292510 RPAP1Q9BWH6 1393 aaPredicted RBP16.21■□□□□ 0.19
VPS28-201ENST00000292510 TCRBV5S4A2TA0A5A2 114 aa16.2■□□□□ 0.18
VPS28-201ENST00000292510 DDTLA6NHG4 134 aaPredicted RBP16.2■□□□□ 0.18
VPS28-201ENST00000292510 FAM155AB1AL88 458 aaPredicted RBP16.2■□□□□ 0.18
VPS28-201ENST00000292510 ERC2O15083 957 aa16.2■□□□□ 0.18
VPS28-201ENST00000292510 SLURP2P0DP57 97 aa16.2■□□□□ 0.18
VPS28-201ENST00000292510 ECE1P42892 770 aa16.2■□□□□ 0.18
VPS28-201ENST00000292510 MAP3K11Q16584 847 aa16.2■□□□□ 0.18
VPS28-201ENST00000292510 LDLRAD1Q5T700 205 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms