RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 EFCC1Q9HA90 598 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 ZFYVE28Q9HCC9 887 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 DAGLAQ9Y4D2 1042 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 SNCAIPQ9Y6H5 919 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 CCER2I3L3R5 266 aa15.86■□□□□ 0.13
CD44-203ENST00000278386 PHKA1P46020 1223 aa15.86■□□□□ 0.13
CD44-203ENST00000278386 RARSP54136 660 aaKnown RBP15.86■□□□□ 0.13
CD44-203ENST00000278386 TCP10Q12799 353 aa15.86■□□□□ 0.13
CD44-203ENST00000278386 ZNF341Q9BYN7 854 aa15.86■□□□□ 0.13
CD44-203ENST00000278386 DENND2AQ9ULE3 1009 aa15.86■□□□□ 0.13
CD44-203ENST00000278386 WDHD1O75717 1129 aaPredicted RBP15.85■□□□□ 0.13
CD44-203ENST00000278386 ERO1BQ86YB8 467 aa15.85■□□□□ 0.13
CD44-203ENST00000278386 CENPFP49454 3210 aa15.85■□□□□ 0.13
CD44-203ENST00000278386 DOCK1Q14185 1865 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 SEMA3EO15041 775 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 GNAI3P08754 354 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 CETPP11597 493 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 ADORA1P30542 326 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 PPIL2Q13356 520 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 SNAPC2Q13487 334 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 CDC42EP5Q6NZY7 148 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 MIGA2Q7L4E1 593 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 FAM43AQ8N2R8 423 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 ZGPATQ8N5A5 531 aaKnown RBP15.84■□□□□ 0.13
CD44-203ENST00000278386 FAM151AQ8WW52 585 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 COPRSQ9NQ92 184 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 PTPN22Q9Y2R2 807 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 SALL1Q9NSC2 1324 aa15.84■□□□□ 0.13
CD44-203ENST00000278386 IRF6O14896 467 aa15.83■□□□□ 0.12
CD44-203ENST00000278386 SRGAP3O43295 1099 aa15.83■□□□□ 0.12
CD44-203ENST00000278386 NFIAQ12857 509 aa15.83■□□□□ 0.12
CD44-203ENST00000278386 CCDC102BQ68D86 513 aa15.83■□□□□ 0.12
CD44-203ENST00000278386 DZIP1Q86YF9 867 aaKnown RBP15.83■□□□□ 0.12
CD44-203ENST00000278386 PTPRFP10586 1907 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 SLC34A2O95436 690 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 INPP5BP32019 993 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 ARHGEF6Q15052 776 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 PRPF38BQ5VTL8 546 aaKnown RBP15.82■□□□□ 0.12
CD44-203ENST00000278386 INTS3Q68E01 1043 aaKnown RBP15.82■□□□□ 0.12
CD44-203ENST00000278386 USP40Q9NVE5 1235 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 ABCF2Q9UG63 623 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 MAST2Q6P0Q8 1798 aa15.82■□□□□ 0.12
CD44-203ENST00000278386 BTBD19C9JJ37 291 aa15.81■□□□□ 0.12
CD44-203ENST00000278386 CAP1Q01518 475 aa15.81■□□□□ 0.12
CD44-203ENST00000278386 PPATQ06203 517 aa15.81■□□□□ 0.12
CD44-203ENST00000278386 RASGRF1Q13972 1273 aa15.81■□□□□ 0.12
CD44-203ENST00000278386 KIAA0100Q14667 2235 aaKnown RBP15.81■□□□□ 0.12
CD44-203ENST00000278386 ARHGAP45Q92619 1136 aa15.81■□□□□ 0.12
CD44-203ENST00000278386 FRAT1Q92837 279 aaPredicted RBP15.81■□□□□ 0.12
CD44-203ENST00000278386 ATAD5Q96QE3 1844 aa15.81■□□□□ 0.12
CD44-203ENST00000278386 MGAMO43451 1857 aa15.8■□□□□ 0.12
CD44-203ENST00000278386 A0A1B0GUL7 405 aa15.8■□□□□ 0.12
CD44-203ENST00000278386 IPO8O15397 1037 aaKnown RBP15.8■□□□□ 0.12
CD44-203ENST00000278386 TFCP2Q12800 502 aa15.8■□□□□ 0.12
CD44-203ENST00000278386 KIF22Q14807 665 aa15.8■□□□□ 0.12
CD44-203ENST00000278386 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.8■□□□□ 0.12
CD44-203ENST00000278386 ZCCHC17Q9NP64 241 aaKnown RBP15.8■□□□□ 0.12
CD44-203ENST00000278386 FAM198AQ9UFP1 575 aa15.8■□□□□ 0.12
CD44-203ENST00000278386 AKAP2Q9Y2D5 859 aa15.8■□□□□ 0.12
CD44-203ENST00000278386 BRCA2P51587 3418 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 POTEFA5A3E0 1075 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 TLR2O60603 784 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 ECM2O94769 699 aaPredicted RBP15.79■□□□□ 0.12
CD44-203ENST00000278386 TRIM27P14373 513 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 TIMM10P62072 90 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 MVPQ14764 893 aaKnown RBP15.79■□□□□ 0.12
CD44-203ENST00000278386 SLC9C1Q4G0N8 1177 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 ZSCAN29Q8IWY8 852 aaPredicted RBP15.79■□□□□ 0.12
CD44-203ENST00000278386 SLF2Q8IX21 1173 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 XAGE2Q96GT9 111 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 NEUROD6Q96NK8 337 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 PTCH2Q9Y6C5 1203 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 PHIPQ8WWQ0 1821 aa15.79■□□□□ 0.12
CD44-203ENST00000278386 RFX7Q2KHR2 1363 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 GAKO14976 1311 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 PDS5AQ29RF7 1337 aaKnown RBP15.78■□□□□ 0.12
CD44-203ENST00000278386 BTDP43251 543 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 RGS3P49796 1198 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 PICALMQ13492 652 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 MTX1Q13505 466 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 GORABQ5T7V8 394 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 SPTY2D1Q68D10 685 aaPredicted RBP15.78■□□□□ 0.12
CD44-203ENST00000278386 ATF7IPQ6VMQ6 1270 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 CLUAP1Q96AJ1 413 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 ARMC5Q96C12 935 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 ZNF112Q9UJU3 913 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 TNNQ9UQP3 1299 aa15.78■□□□□ 0.12
CD44-203ENST00000278386 MROH7-TTC4A0A0A0MT08 1334 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 BCAR3O75815 825 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 GNAI2P04899 355 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 LACTBP83111 547 aaPredicted RBP15.77■□□□□ 0.12
CD44-203ENST00000278386 NOL9Q5SY16 702 aaKnown RBP15.77■□□□□ 0.12
CD44-203ENST00000278386 ERICH6Q7L0X2 663 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 ZFPM1Q8IX07 1006 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 TMEM106CQ9BVX2 250 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 ARHGAP39Q9C0H5 1083 aa15.77■□□□□ 0.12
CD44-203ENST00000278386 CDK5RAP2Q96SN8 1893 aa15.77■□□□□ 0.11
CD44-203ENST00000278386 ATRNL1Q5VV63 1379 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 MYO5AQ9Y4I1 1855 aaKnown RBP15.76■□□□□ 0.11
CD44-203ENST00000278386 ENTPD3O75355 529 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms