RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 KIF13AQ9H1H9 1805 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 TMCO5BA8MYB1 307 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 K7ELQ4 463 aaPredicted RBP8.9□□□□□ -0.99
USP3-201ENST00000268049 NLRX1Q86UT6 975 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 PYM1Q9BRP8 204 aaKnown RBP8.9□□□□□ -0.99
USP3-201ENST00000268049 BSDC1Q9NW68 430 aaPredicted RBP8.9□□□□□ -0.99
USP3-201ENST00000268049 CALM1P0DP23 149 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 CALM2P0DP24 149 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 CALM3P0DP25 149 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 CRKLP46109 303 aaKnown RBP8.9□□□□□ -0.99
USP3-201ENST00000268049 AMPD3Q01432 767 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 MSANTD4Q8NCY6 345 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 GOLGA1Q92805 767 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 NACA2Q9H009 215 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 VAT1LQ9HCJ6 419 aa8.9□□□□□ -0.99
USP3-201ENST00000268049 SERPINC1P01008 464 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 MMP10P09238 476 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 CHURC1Q8WUH1 139 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 TNMDQ9H2S6 317 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 STX6O43752 255 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 CWF19L2Q2TBE0 894 aaKnown RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 MAP9Q49MG5 647 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 LUZP1Q86V48 1076 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 MRPL50Q8N5N7 158 aaKnown RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 DPF3Q92784 378 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 FAM89AQ96GI7 184 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 ZFP91Q96JP5 570 aaPredicted RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 SLIT1O75093 1534 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 SYCE3A1L190 88 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 KBTBD13C9JR72 458 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 PHACTR2O75167 634 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 MAP4K4O95819 1239 aaPredicted RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 BLOC1S2Q6QNY1 142 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 UBA5Q9GZZ9 404 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 CCDC8Q9H0W5 538 aaPredicted RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 SEPT11Q9NVA2 429 aaKnown RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 CPSF1Q10570 1443 aaKnown RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 ZBBXA8MT70 800 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 KCNQ2O43526 872 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 CPLX3Q8WVH0 158 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 GTF3C6Q969F1 213 aa8.89□□□□□ -0.99
USP3-201ENST00000268049 RRP36Q96EU6 259 aaKnown RBP8.89□□□□□ -0.99
USP3-201ENST00000268049 FTOQ9C0B1 505 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP3-201ENST00000268049 ARHGEF37A1IGU5 675 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 HCLS1P14317 486 aaPredicted RBP8.88□□□□□ -0.99
USP3-201ENST00000268049 GCNAQ96QF7 691 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 METTL22Q9BUU2 404 aaPredicted RBP8.88□□□□□ -0.99
USP3-201ENST00000268049 USP31Q70CQ4 1352 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 GOLGA6L10A0A0M3HER8 536 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 CHD1LQ86WJ1 897 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 NCAPG2Q86XI2 1143 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 PIGBQ92521 554 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 STK24Q9Y6E0 443 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 SLC4A4Q9Y6R1 1079 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 KCNQ4P56696 695 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 SSRP1Q08945 709 aaKnown RBP8.88□□□□□ -0.99
USP3-201ENST00000268049 JAKMIP3Q5VZ66 844 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 MICAL1Q8TDZ2 1067 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 MTFR1LQ9H019 292 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 MCM9Q9NXL9 1143 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 USP16Q9Y5T5 823 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 PALLDQ8WX93 1383 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 CBFA2T2O43439 604 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 USPL1Q5W0Q7 1092 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 BOLA2Q9H3K6 86 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 TCP11L1Q9NUJ3 509 aa8.88□□□□□ -0.99
USP3-201ENST00000268049 TRPM1Q7Z4N2 1603 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 KCNJ6P48051 423 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 ZNF157P51786 506 aaPredicted RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 TXNRD1Q16881 649 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 PPFIBP1Q86W92 1011 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 CCDC24Q8N4L8 307 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 NBPF15Q8N660 670 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 PTPDC1A2A3K4 754 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 GTPBP6O43824 516 aaPredicted RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 ALDH1A1P00352 501 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 CFAP45Q9UL16 551 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 TRIM35Q9UPQ4 493 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 CD2APQ9Y5K6 639 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 SPATA31A1Q5TZJ5 1347 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 WDR33Q9C0J8 1336 aaKnown RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 GOLGA8AA7E2F4 631 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 GOLGA8BA8MQT2 603 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 KCNQ3O43525 872 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 SNX16P57768 344 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 MCF2L2Q86YR7 1114 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 ERBB4Q15303 1308 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 VWDEQ8N2E2 1590 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 TMEM131LA2VDJ0 1609 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 ARHGAP23Q9P227 1491 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 CCDC85CA6NKD9 419 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 MCM3P25205 808 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 NEK4P51957 841 aa8.87□□□□□ -0.99
USP3-201ENST00000268049 RPS8P62241 208 aaKnown RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 MAP2K1Q02750 393 aaPredicted RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 SEPT7Q16181 437 aaKnown RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 ZSCAN31Q96LW9 406 aaPredicted RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 ADD3Q9UEY8 706 aaKnown RBP8.87□□□□□ -0.99
USP3-201ENST00000268049 TECPR2O15040 1411 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms