RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 NYAP1Q6ZVC0 841 aa10.56□□□□□ -0.72
MSH4-201ENST00000263187 OVOS2A0A0G2JMS6 1433 aa10.56□□□□□ -0.72
MSH4-201ENST00000263187 ERICH4A6NGS2 130 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 UBASH3AP57075 661 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 TCIRG1Q13488 830 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 MIGA1Q8NAN2 632 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 NUP133Q8WUM0 1156 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 FANCLQ9NW38 375 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.55□□□□□ -0.72
MSH4-201ENST00000263187 NEDD4P46934 1319 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 SOS2Q07890 1332 aaPredicted RBP10.55□□□□□ -0.72
MSH4-201ENST00000263187 TMEM67Q5HYA8 995 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 CREBRFQ8IUR6 639 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 TRMT112Q9UI30 125 aaKnown RBP10.55□□□□□ -0.72
MSH4-201ENST00000263187 MRC1P22897 1456 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 NLRP12P59046 1061 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 NCAPHQ15003 741 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 KIF6Q6ZMV9 814 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 AIDAQ96BJ3 306 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 ARMT1Q9H993 441 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 TMOD3Q9NYL9 352 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 ANGEL1Q9UNK9 670 aaKnown RBP10.55□□□□□ -0.72
MSH4-201ENST00000263187 AKAP2Q9Y2D5 859 aa10.55□□□□□ -0.72
MSH4-201ENST00000263187 SLIT3O75094 1523 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 GOLGA8AA7E2F4 631 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 BTBD18B2RXH4 712 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 CASP1P29466 404 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 PDE4BQ07343 736 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 FOXP4Q8IVH2 680 aaPredicted RBP10.54□□□□□ -0.72
MSH4-201ENST00000263187 POLR3EQ9NVU0 708 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 CGNQ9P2M7 1197 aaKnown RBP10.54□□□□□ -0.72
MSH4-201ENST00000263187 IFIT3O14879 490 aaKnown RBP10.54□□□□□ -0.72
MSH4-201ENST00000263187 RANBP6O60518 1105 aaKnown RBP10.54□□□□□ -0.72
MSH4-201ENST00000263187 URI1O94763 535 aaPredicted RBP10.54□□□□□ -0.72
MSH4-201ENST00000263187 IARSP41252 1262 aaKnown RBP10.54□□□□□ -0.72
MSH4-201ENST00000263187 MAGEB6Q8N7X4 407 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 CNNM3Q8NE01 707 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 GPR108Q9NPR9 543 aa10.54□□□□□ -0.72
MSH4-201ENST00000263187 A0A1W2PQ27 194 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 A0A1W2PQ64 194 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 A0A1W2PQD8 194 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 ZBTB43O43298 467 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 SLU7O95391 586 aaKnown RBP10.53□□□□□ -0.72
MSH4-201ENST00000263187 ADKP55263 362 aaKnown RBP10.53□□□□□ -0.72
MSH4-201ENST00000263187 TPM4P67936 248 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 NR5A1Q13285 461 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 TRIM29Q14134 588 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 APOA5Q6Q788 366 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 ZSWIM4Q9H7M6 989 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 OGFRQ9NZT2 677 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 LAMA4Q16363 1823 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 CDK11BP21127 795 aaKnown RBP10.53□□□□□ -0.72
MSH4-201ENST00000263187 SLC39A14Q15043 492 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 SLC4A8Q2Y0W8 1093 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 KLHL10Q6JEL2 608 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 CPLX3Q8WVH0 158 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.53□□□□□ -0.72
MSH4-201ENST00000263187 PCDHA5Q9Y5H7 936 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 IRS4O14654 1257 aaPredicted RBP10.53□□□□□ -0.72
MSH4-201ENST00000263187 NEMFO60524 1076 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 CIAO1O76071 339 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 MBD4O95243 580 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 YEATS4O95619 227 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 CMA1P23946 247 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 CCDC102BQ68D86 513 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 USP49Q70CQ1 688 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 DESI2Q9BSY9 194 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 HSD3B7Q9H2F3 369 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 ZSWIM5Q9P217 1185 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 PCDH11XQ9BZA7 1347 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 PCDH11YQ9BZA8 1340 aa10.53□□□□□ -0.72
MSH4-201ENST00000263187 WTIPA6NIX2 430 aaPredicted RBP10.52□□□□□ -0.72
MSH4-201ENST00000263187 UBAP1LF5GYI3 381 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 PRR29P0C7W0 189 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 IL2RBP14784 551 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 PDE6AP16499 860 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 ADD2P35612 726 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 GSDMDP57764 484 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 RFX7Q2KHR2 1363 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 TNS3Q68CZ2 1445 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 BRAPQ7Z569 592 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 METTL16Q86W50 562 aaKnown RBP10.52□□□□□ -0.72
MSH4-201ENST00000263187 TTLL11Q8NHH1 800 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 PIGBQ92521 554 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 STAMQ92783 540 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 ISCA1Q9BUE6 129 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 DDX41Q9UJV9 622 aaKnown RBP10.52□□□□□ -0.72
MSH4-201ENST00000263187 TACC3Q9Y6A5 838 aa10.52□□□□□ -0.72
MSH4-201ENST00000263187 MINDY4BA8MYZ0 360 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 POLR2DO15514 142 aaKnown RBP10.52□□□□□ -0.73
MSH4-201ENST00000263187 STX17P56962 302 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 LRRFIP1Q32MZ4 808 aaKnown RBP10.52□□□□□ -0.73
MSH4-201ENST00000263187 ARHGAP29Q52LW3 1261 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 ATL3Q6DD88 541 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 NAPBQ9H115 298 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 KCNH3Q9ULD8 1083 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 SLC12A7Q9Y666 1083 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 SIPA1L3O60292 1781 aaPredicted RBP10.52□□□□□ -0.73
MSH4-201ENST00000263187 FAM205CA6NFA0 338 aa10.52□□□□□ -0.73
MSH4-201ENST00000263187 SH2B2O14492 632 aaPredicted RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms