RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 BATFQ16520 125 aa-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 LRRC25Q8N386 305 aaPredicted RBP-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 C11orf68Q9H3H3 251 aaKnown RBP-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 PTPRDP23468 1912 aa-1.9□□□□□ -2.71
SCN1A-215ENST00000637285 DCCP43146 1447 aa-1.91□□□□□ -2.71
SCN1A-215ENST00000637285 ESPL1Q14674 2120 aa-1.91□□□□□ -2.71
SCN1A-215ENST00000637285 PKHD1P08F94 4074 aa-1.91□□□□□ -2.71
SCN1A-215ENST00000637285 A0A096LNT2 108 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 DPRXA6NFQ7 191 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 YPEL3P61236 119 aaPredicted RBP-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 TNNC1P63316 161 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 XIAPP98170 497 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 CDK6Q00534 326 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 PPP1R1AQ13522 171 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 CD200R1LQ6Q8B3 271 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 DEFB125Q8N687 156 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 RAB37Q96AX2 223 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 TOMM6Q96B49 74 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 PRADC1Q9BSG0 188 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 FBXL12Q9NXK8 326 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 LY96Q9Y6Y9 160 aa-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 MED1Q15648 1581 aaPredicted RBP-1.91□□□□□ -2.72
SCN1A-215ENST00000637285 A0A087X0T9 212 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 PSMD12O00232 456 aaPredicted RBP-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 HLA-DRAP01903 254 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 NMBP08949 121 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 RPS3P23396 243 aaKnown RBP eCLIP-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 CDC34P49427 236 aaPredicted RBP-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 RSU1Q15404 277 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 ZNHIT3Q15649 155 aaPredicted RBP-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 NKAIN1Q4KMZ8 207 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 FBXO48Q5FWF7 155 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 C1orf134Q5TEV5 83 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 TMEM161BQ8NDZ6 487 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 OR51A2Q8NGJ7 313 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 PPTC7Q8NI37 304 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 LINC00467Q9BRT7 94 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 ABCA1O95477 2261 aa-1.92□□□□□ -2.72
SCN1A-215ENST00000637285 A6NN06 94 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 M0R3E3 92 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 OR2J2O76002 312 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 RHOBP62745 196 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 SYCP1Q15431 976 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 DNM1P34Q6PK57 102 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 C5orf17Q8NAS9 161 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 OR5L1Q8NGL2 311 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 NIPSNAP1Q9BPW8 284 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 RIMBP3CA6NJZ7 1639 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 RIMBP3BA6NNM3 1639 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 RIMBP3Q9UFD9 1639 aa-1.93□□□□□ -2.72
SCN1A-215ENST00000637285 A0A087WSZ3 146 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 H7BYZ3 331 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 ISG15P05161 165 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 SYT1P21579 422 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 FXYD3Q14802 87 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 ST13P4Q8IZP2 240 aaPredicted RBP-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 OR10K1Q8NGX5 313 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 ADAT3Q96EY9 351 aaPredicted RBP-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 DHRS9Q9BPW9 319 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 POFUT2Q9Y2G5 429 aa-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 SPTBN1Q01082 2364 aaKnown RBP-1.94□□□□□ -2.72
SCN1A-215ENST00000637285 A0A096LPI6 279 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 A0A0J9YY99 117 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 TINCRA0A1B0GVN0 87 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 C1orf196B1AJZ1 125 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 H0YIV9 168 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 OR7C1O76099 320 aaPredicted RBP-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 UGT2B7P16662 529 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 EDDM3AQ14507 147 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 TNFAIP8L2Q6P589 184 aaPredicted RBP-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 SYCE1Q8N0S2 351 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 C5orf56Q8N8D9 126 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 LRRC20Q8TCA0 184 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 CCDC124Q96CT7 223 aaKnown RBP-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 CYP4F30PQ9H0H9 118 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 OBSL1O75147 1896 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 C2CD3Q4AC94 2353 aa-1.95□□□□□ -2.72
SCN1A-215ENST00000637285 ARHGEF28Q8N1W1 1705 aaKnown RBP-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 EXOC1LA0A1B0GW35 172 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 A8MWV9 139 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 FTCDNL1E5RQL4 147 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 MPC1LP0DKB6 136 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 MARCKSL1P49006 195 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 VBP1P61758 197 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 SNCBQ16143 134 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 Q5VSD8 79 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 ARPINQ7Z6K5 226 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 COMMD7Q86VX2 200 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 DDI1Q8WTU0 396 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 TMEM14BQ9NUH8 114 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 C1orf109Q9NX04 203 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 SCN8AQ9UQD0 1980 aa-1.96□□□□□ -2.72
SCN1A-215ENST00000637285 IGHV3-33P01772 117 aa-1.97□□□□□ -2.72
SCN1A-215ENST00000637285 SLAMF1Q13291 335 aa-1.97□□□□□ -2.72
SCN1A-215ENST00000637285 Q8IZM0 81 aa-1.97□□□□□ -2.72
SCN1A-215ENST00000637285 CMTM6Q9NX76 183 aa-1.97□□□□□ -2.72
SCN1A-215ENST00000637285 CYSLTR1Q9Y271 337 aa-1.97□□□□□ -2.72
SCN1A-215ENST00000637285 EPG5Q9HCE0 2579 aa-1.97□□□□□ -2.72
SCN1A-215ENST00000637285 PPRC1Q5VV67 1664 aaKnown RBP-1.98□□□□□ -2.73
SCN1A-215ENST00000637285 NBDYA0A0U1RRE5 68 aa-1.98□□□□□ -2.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms