RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CRYBA1P05813 215 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 PEA15Q15121 130 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 HAGHQ16775 308 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 ZNF506Q5JVG8 444 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 PQLC2Q6ZP29 291 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 LINC00518Q8N0U6 118 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 ZNF503Q96F45 646 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 SLC25A2Q9BXI2 301 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 TREM1Q9NP99 234 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 HIVEP1P15822 2718 aa14.24□□□□□ -0.13
CLN3-254ENST00000637050 TRAV5A0A0B4J249 113 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 LOC102723971A0A1B0GUV8 181 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 CYSRT1A8MQ03 144 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 IFNA1P01562 189 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 IGHV3-11P01762 117 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 BCL2P10415 239 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 GCHFRP30047 84 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 USF2Q15853 346 aaPredicted RBP14.23□□□□□ -0.13
CLN3-254ENST00000637050 SMDT1Q9H4I9 107 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 C9JQL5 133 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 PPP5D1E7EU14 171 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 CRLF1O75462 422 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 ARL3P36405 182 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 PPT1P50897 306 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 RELQ04864 619 aaPredicted RBP14.23□□□□□ -0.13
CLN3-254ENST00000637050 ICAM4Q14773 271 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 OR5AU1Q8NGC0 362 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 OR4X2Q8NGF9 303 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 SLC25A39Q9BZJ4 359 aaPredicted RBP14.23□□□□□ -0.13
CLN3-254ENST00000637050 GNB4Q9HAV0 340 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 MANBALQ9NQG1 85 aa14.23□□□□□ -0.13
CLN3-254ENST00000637050 RPLP1P05386 114 aaKnown RBP14.22□□□□□ -0.13
CLN3-254ENST00000637050 FAM209BQ5JX69 171 aa14.22□□□□□ -0.13
CLN3-254ENST00000637050 TOMM20LQ6UXN7 152 aa14.22□□□□□ -0.13
CLN3-254ENST00000637050 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.22□□□□□ -0.13
CLN3-254ENST00000637050 C16orf95Q9H693 158 aa14.22□□□□□ -0.13
CLN3-254ENST00000637050 ZFAND3Q9H8U3 227 aa14.22□□□□□ -0.13
CLN3-254ENST00000637050 IGHV3-35A0A0C4DH35 117 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 TMEM218A2RU14 115 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 OR7C2O60412 319 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 TRBV12-3P01733 135 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 S100A6P06703 90 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 TAGLN2P37802 199 aaKnown RBP14.21□□□□□ -0.13
CLN3-254ENST00000637050 KLHDC1Q8N7A1 406 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 SHANK2-AS3Q9BTD1 123 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 VAX2Q9UIW0 290 aa14.21□□□□□ -0.13
CLN3-254ENST00000637050 KRBOX1C9JBD0 128 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 H3BRN7 92 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 S100A7AQ86SG5 101 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 NARS2Q96I59 477 aaKnown RBP14.2□□□□□ -0.14
CLN3-254ENST00000637050 TMEM167BQ9NRX6 74 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 BMPR1BO00238 502 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 TSPAN4O14817 238 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 PAGE4O60829 102 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 HSPB1P04792 205 aaKnown RBP14.2□□□□□ -0.14
CLN3-254ENST00000637050 STXBP6Q8NFX7 210 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 RXFP4Q8TDU9 374 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 UBE2E2Q96LR5 201 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 LINC00052Q96N35 136 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 OR51M1Q9H341 326 aa14.2□□□□□ -0.14
CLN3-254ENST00000637050 ZP3P21754 424 aa14.19□□□□□ -0.14
CLN3-254ENST00000637050 LEMD1Q68G75 181 aa14.19□□□□□ -0.14
CLN3-254ENST00000637050 WIPF2Q8TF74 440 aaPredicted RBP14.19□□□□□ -0.14
CLN3-254ENST00000637050 PAXXQ9BUH6 204 aa14.19□□□□□ -0.14
CLN3-254ENST00000637050 PEF1Q9UBV8 284 aaKnown RBP14.19□□□□□ -0.14
CLN3-254ENST00000637050 MTORP42345 2549 aa14.18□□□□□ -0.14
CLN3-254ENST00000637050 TCF21O43680 179 aa14.18□□□□□ -0.14
CLN3-254ENST00000637050 NDUFA7O95182 113 aa14.18□□□□□ -0.14
CLN3-254ENST00000637050 OR10J4P0C629 311 aa14.18□□□□□ -0.14
CLN3-254ENST00000637050 PYYP10082 97 aa14.18□□□□□ -0.14
CLN3-254ENST00000637050 RABAC1Q9UI14 185 aa14.18□□□□□ -0.14
CLN3-254ENST00000637050 ZNF98A6NK75 572 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 GGCTO75223 188 aaKnown RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 SRP19P09132 144 aaKnown RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 SFTA3P0C7M3 94 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 GP9P14770 177 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 UBE2L3P68036 154 aaKnown RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 MEF2BQ02080 365 aaPredicted RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 LINC01006Q8NI28 216 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 FXYD5Q96DB9 178 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 SLC35B3Q9H1N7 401 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 TMEM14CQ9P0S9 112 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 ARL2-SNX15V9GYD0 113 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 IGHV3OR16-8A0A075B7F1 116 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 CLPSL1A2RUU4 121 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 NDUFA4O00483 81 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 NDUFS6O75380 124 aaKnown RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 LGALS1P09382 135 aaKnown RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 CD81P60033 236 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 UBE2G2P60604 165 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 FLI1Q01543 452 aaPredicted RBP14.17□□□□□ -0.14
CLN3-254ENST00000637050 TCTEX1D4Q5JR98 221 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 OR5B12Q96R08 314 aa14.17□□□□□ -0.14
CLN3-254ENST00000637050 PCP4L1A6NKN8 68 aa14.16□□□□□ -0.14
CLN3-254ENST00000637050 FAM74A7A6NL05 159 aa14.16□□□□□ -0.14
CLN3-254ENST00000637050 ADCYAP1P18509 176 aa14.16□□□□□ -0.14
CLN3-254ENST00000637050 S100A7P31151 101 aa14.16□□□□□ -0.14
CLN3-254ENST00000637050 YTHDF2Q9Y5A9 579 aaKnown RBP14.16□□□□□ -0.14
CLN3-254ENST00000637050 C10orf91Q5T1B1 145 aa14.15□□□□□ -0.14
CLN3-254ENST00000637050 TXNDC17Q9BRA2 123 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms