RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 IGKV1-16P04430 117 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 TYMSP04818 313 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 SPACA3Q8IXA5 215 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 LIME1Q9H400 295 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 JKAMPQ9P055 326 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 TRAV8-1A0A0A6YYK1 113 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 THBDP07204 575 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 MBNL3Q9NUK0 354 aaKnown RBP11.48□□□□□ -0.57
CPSF1-212ENST00000616140 NPFFO15130 113 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 TNFSF13O75888 250 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 PPBPP02775 128 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 SFTA2Q6UW10 78 aa11.48□□□□□ -0.57
CPSF1-212ENST00000616140 ZNF418Q8TF45 676 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-212ENST00000616140 ITLN2Q8WWU7 325 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-212ENST00000616140 LCN12Q6JVE5 192 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 ATP5L2Q7Z4Y8 100 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 TEX29Q8N6K0 151 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 OR5AN1Q8NGI8 311 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 NHP2Q9NX24 153 aaKnown RBP11.47□□□□□ -0.57
CPSF1-212ENST00000616140 MOB4Q9Y3A3 225 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 C19orf67A6NJJ6 358 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 TCRAP04437 139 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 CD7P09564 240 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 VOPP1Q96AW1 172 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 IFI27L1Q96BM0 104 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 SLC25A39Q9BZJ4 359 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-212ENST00000616140 NXT2Q9NPJ8 142 aaKnown RBP11.47□□□□□ -0.57
CPSF1-212ENST00000616140 IGHV1-3A0A0C4DH29 117 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 A0A1B0GWJ7 208 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 EVI2AP22794 236 aa11.47□□□□□ -0.57
CPSF1-212ENST00000616140 SLC25A48Q6ZT89 311 aaKnown RBP11.47□□□□□ -0.57
CPSF1-212ENST00000616140 NUTF2P61970 127 aaKnown RBP11.47□□□□□ -0.57
CPSF1-212ENST00000616140 H0YJW9 148 aa11.46□□□□□ -0.57
CPSF1-212ENST00000616140 DUX3Q96PT4 197 aa11.46□□□□□ -0.57
CPSF1-212ENST00000616140 RNASE1P07998 156 aaKnown RBP11.46□□□□□ -0.57
CPSF1-212ENST00000616140 RPL15P61313 204 aaKnown RBP11.46□□□□□ -0.57
CPSF1-212ENST00000616140 C15orf32Q32M92 178 aa11.46□□□□□ -0.57
CPSF1-212ENST00000616140 ZNF474Q6S9Z5 364 aaPredicted RBP11.46□□□□□ -0.57
CPSF1-212ENST00000616140 JMJD8Q96S16 334 aa11.46□□□□□ -0.57
CPSF1-212ENST00000616140 CRIM1Q9NZV1 1036 aa11.46□□□□□ -0.57
CPSF1-212ENST00000616140 C5orf30Q96GV9 206 aa11.46□□□□□ -0.58
CPSF1-212ENST00000616140 ALKBH7Q9BT30 221 aaPredicted RBP11.46□□□□□ -0.58
CPSF1-212ENST00000616140 IGKV2-40A0A087WW87 121 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 MBD3L4A6NDZ8 208 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 MBD3L3A6NE82 208 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 MBD3L5A6NJ08 208 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 IGKV2D-40P01614 121 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 WNT2P09544 360 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 MBD3L2Q8NHZ7 208 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 LINC00479Q96M42 142 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 RSPO1Q2MKA7 263 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 GAFA1Q96PS6 74 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 IGHG3P01860 377 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 KLRD1Q13241 179 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 C1orf194Q5T5A4 169 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 CHCHD1Q96BP2 118 aaKnown RBP11.45□□□□□ -0.58
CPSF1-212ENST00000616140 TRAV21A0A0B4J279 112 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 NCR2O95944 276 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 TRGV9Q99603 122 aa11.45□□□□□ -0.58
CPSF1-212ENST00000616140 TRAV40A0A0B4J280 105 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 ACTL10Q5JWF8 245 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 OR13C6PQ8NH95 151 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 PROK2Q9HC23 129 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 PLXND1Q9Y4D7 1925 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 WDR87Q6ZQQ6 2873 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 A6NNC1 897 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 SMAD7O15105 426 aaKnown RBP11.44□□□□□ -0.58
CPSF1-212ENST00000616140 RNASE2P10153 161 aaKnown RBP11.44□□□□□ -0.58
CPSF1-212ENST00000616140 TNCP24821 2201 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 LY6HO94772 140 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 DPM2O94777 84 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 DNAL4O96015 105 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 SCGB1A1P11684 91 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 PAX1P15863 534 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 PAX8Q06710 450 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 LY6DQ14210 128 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 NUP35Q8NFH5 326 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 ZNRD1Q9P1U0 126 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 ANAPC10Q9UM13 185 aa11.44□□□□□ -0.58
CPSF1-212ENST00000616140 DYSFO75923 2080 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 C3orf79P0CE67 100 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 PAX9P55771 341 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 DMRTC2Q8IXT2 367 aaPredicted RBP11.43□□□□□ -0.58
CPSF1-212ENST00000616140 FNDC4Q9H6D8 234 aaPredicted RBP11.43□□□□□ -0.58
CPSF1-212ENST00000616140 SIGLEC9Q9Y336 463 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 C2CD3Q4AC94 2353 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 ST20Q9HBF5 79 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 A0A0G2JNJ9 132 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 SRD5A1P18405 259 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 TMEM219Q86XT9 240 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 COPS9Q8WXC6 57 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 Q9UFV3 132 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 SELENOKQ9Y6D0 94 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 LY96Q9Y6Y9 160 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 SRSF1Q07955 248 aaKnown RBP eCLIP11.43□□□□□ -0.585e-7■□□□□ 8.8
CPSF1-212ENST00000616140 Q8TAT8 98 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 LINC01587Q99440 93 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 NLRC5Q86WI3 1866 aa11.43□□□□□ -0.58
CPSF1-212ENST00000616140 D6R8Y8 96 aa11.42□□□□□ -0.58
CPSF1-212ENST00000616140 TMEM262E9PQX1 116 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms