RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GCHFRP30047 84 aa11□□□□□ -0.65
USP39-220ENST00000613444 ICAM4Q14773 271 aa11□□□□□ -0.65
USP39-220ENST00000613444 ZNF506Q5JVG8 444 aa11□□□□□ -0.65
USP39-220ENST00000613444 TOMM20LQ6UXN7 152 aa11□□□□□ -0.65
USP39-220ENST00000613444 PBDC1Q9BVG4 233 aa11□□□□□ -0.65
USP39-220ENST00000613444 HIGD1AQ9Y241 93 aa11□□□□□ -0.65
USP39-220ENST00000613444 CRLF1O75462 422 aa11□□□□□ -0.65
USP39-220ENST00000613444 BCL2P10415 239 aa11□□□□□ -0.65
USP39-220ENST00000613444 PSMB3P49720 205 aa11□□□□□ -0.65
USP39-220ENST00000613444 OR4X2Q8NGF9 303 aa11□□□□□ -0.65
USP39-220ENST00000613444 SUN5Q8TC36 379 aa11□□□□□ -0.65
USP39-220ENST00000613444 SLC25A39Q9BZJ4 359 aaPredicted RBP11□□□□□ -0.65
USP39-220ENST00000613444 EIF5A2Q9GZV4 153 aaKnown RBP11□□□□□ -0.65
USP39-220ENST00000613444 SETD2Q9BYW2 2564 aaPredicted RBP11□□□□□ -0.65
USP39-220ENST00000613444 ANKRD34BA5PLL1 514 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 S100A1P23297 94 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 TAS2R45P59539 299 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 KHDC3LQ587J8 217 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 PQLC2Q6ZP29 291 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 KLHDC1Q8N7A1 406 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 OR5AU1Q8NGC0 362 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 LINC00052Q96N35 136 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 C16orf95Q9H693 158 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 H3BRN7 92 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 ARL3P36405 182 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 LEMD1Q68G75 181 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 JMJD8Q96S16 334 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 SHANK2-AS3Q9BTD1 123 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 GNB4Q9HAV0 340 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 TREM1Q9NP99 234 aa10.99□□□□□ -0.65
USP39-220ENST00000613444 TMEM218A2RU14 115 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 CLPSL1A2RUU4 121 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 BMPR1BO00238 502 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 PEA15Q15121 130 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 TCTEX1D4Q5JR98 221 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 IQCF2Q8IXL9 164 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 SMDT1Q9H4I9 107 aa10.98□□□□□ -0.65
USP39-220ENST00000613444 NIPBLQ6KC79 2804 aaeCLIP10.98□□□□□ -0.655e-6■■■■■ 32.2
USP39-220ENST00000613444 OR7C2O60412 319 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 CRYBA1P05813 215 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 PYYP10082 97 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 ADCYAP1P18509 176 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 RELQ04864 619 aaPredicted RBP10.97□□□□□ -0.65
USP39-220ENST00000613444 LINC01006Q8NI28 216 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 RXFP4Q8TDU9 374 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 MANBALQ9NQG1 85 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 VAX2Q9UIW0 290 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 IGHV3OR16-8A0A075B7F1 116 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 PAGE4O60829 102 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 OR10J4P0C629 311 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 GP9P14770 177 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 FXYD5Q96DB9 178 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 UBE2E2Q96LR5 201 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 C2CD3Q4AC94 2353 aa10.97□□□□□ -0.65
USP39-220ENST00000613444 IFNA1P01562 189 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 HSPB1P04792 205 aaKnown RBP10.96□□□□□ -0.65
USP39-220ENST00000613444 SRP19P09132 144 aaKnown RBP10.96□□□□□ -0.65
USP39-220ENST00000613444 ZP3P21754 424 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 PPT1P50897 306 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 CD81P60033 236 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 NARS2Q96I59 477 aaKnown RBP10.96□□□□□ -0.65
USP39-220ENST00000613444 OR5B12Q96R08 314 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 PAXXQ9BUH6 204 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 OR51M1Q9H341 326 aa10.96□□□□□ -0.65
USP39-220ENST00000613444 PEF1Q9UBV8 284 aaKnown RBP10.96□□□□□ -0.65
USP39-220ENST00000613444 ZNF98A6NK75 572 aa10.96□□□□□ -0.66
USP39-220ENST00000613444 KRBOX1C9JBD0 128 aa10.96□□□□□ -0.66
USP39-220ENST00000613444 NDUFA7O95182 113 aa10.96□□□□□ -0.66
USP39-220ENST00000613444 FAM209BQ5JX69 171 aa10.96□□□□□ -0.66
USP39-220ENST00000613444 TMEM167BQ9NRX6 74 aa10.96□□□□□ -0.66
USP39-220ENST00000613444 YTHDF2Q9Y5A9 579 aaKnown RBP10.96□□□□□ -0.66
USP39-220ENST00000613444 FAM74A7A6NL05 159 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 MRPS12O15235 138 aaKnown RBP10.95□□□□□ -0.66
USP39-220ENST00000613444 TCF21O43680 179 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 SFTA3P0C7M3 94 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 UBE2G2P60604 165 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 MEF2BQ02080 365 aaPredicted RBP10.95□□□□□ -0.66
USP39-220ENST00000613444 C10orf91Q5T1B1 145 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 UNQ9165/PRO28630Q6UXU0 137 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 STXBP6Q8NFX7 210 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 SLC35B3Q9H1N7 401 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 TMEM14CQ9P0S9 112 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 RABAC1Q9UI14 185 aa10.95□□□□□ -0.66
USP39-220ENST00000613444 NDUFA4O00483 81 aa10.94□□□□□ -0.66
USP39-220ENST00000613444 LGALS1P09382 135 aaKnown RBP10.94□□□□□ -0.66
USP39-220ENST00000613444 TAGLN2P37802 199 aaKnown RBP10.94□□□□□ -0.66
USP39-220ENST00000613444 UBE2L3P68036 154 aaKnown RBP10.94□□□□□ -0.66
USP39-220ENST00000613444 GGCTO75223 188 aaKnown RBP10.94□□□□□ -0.66
USP39-220ENST00000613444 ATP5G3P48201 142 aa10.94□□□□□ -0.66
USP39-220ENST00000613444 SRSF2Q01130 221 aaKnown RBP10.94□□□□□ -0.66
USP39-220ENST00000613444 U3KQE9 123 aa10.94□□□□□ -0.66
USP39-220ENST00000613444 ARL2-SNX15V9GYD0 113 aa10.94□□□□□ -0.66
USP39-220ENST00000613444 TEP1Q99973 2627 aaKnown RBP10.94□□□□□ -0.66
USP39-220ENST00000613444 C18orf65Q6ZTR6 163 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 CYB561D1Q8N8Q1 229 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 C11orf94C9JXX5 98 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 BUB3O43684 328 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 NDUFS6O75380 124 aaKnown RBP10.93□□□□□ -0.66
USP39-220ENST00000613444 SNRPCP09234 159 aaKnown RBP10.93□□□□□ -0.66
USP39-220ENST00000613444 CRYBB3P26998 211 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms