RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 C19orf24Q9BVV8 132 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 TMSB15BA0A087X1C1 80 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 A0A1B0GXF2 115 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 NCR2O95944 276 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 TNFAIP6P98066 277 aaPredicted RBP14.74□□□□□ -0.05
UPF1-210ENST00000600689 MBNL2Q5VZF2 373 aaKnown RBP14.74□□□□□ -0.05
UPF1-210ENST00000600689 RITA1Q96K30 269 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 IGKV1D-37A0A075B6S9 117 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 TCF15Q12870 199 aa14.74□□□□□ -0.05
UPF1-210ENST00000600689 TCRBV4S1A1TA0A5B7 111 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 MZT1Q08AG7 82 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 WFDC3Q8IUB2 231 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 OR10X1Q8NGY0 326 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 PLSCR4Q9NRQ2 329 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 NDUFA4L2Q9NRX3 87 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 PROCRQ9UNN8 238 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 TM4SF20Q53R12 229 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 RASL11AQ6T310 242 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 GOLT1AQ6ZVE7 132 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 WFDC8Q8IUA0 241 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 DEFB125Q8N687 156 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 CHRDL1Q9BU40 450 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 MEGF9Q9H1U4 602 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 C7orf69Q9H7B7 122 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 RNF7Q9UBF6 113 aa14.73□□□□□ -0.05
UPF1-210ENST00000600689 APOHP02749 345 aaPredicted RBP14.72□□□□□ -0.05
UPF1-210ENST00000600689 FAM106CPP0CH98 169 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 FAM106AQ4KMX7 169 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 C12orf54Q6X4T0 127 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 GAFA1Q96PS6 74 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 ZNF71Q9NQZ8 489 aaPredicted RBP14.72□□□□□ -0.05
UPF1-210ENST00000600689 PTPRZ1P23471 2315 aaPredicted RBP14.72□□□□□ -0.05
UPF1-210ENST00000600689 SERTM2A0A1B0GWG4 89 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 C7orf71A4D174 169 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 C22orf46C9J442 243 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 GPR183P32249 361 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 Q9H3A6 140 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 RPUSD1Q9UJJ7 312 aaKnown RBP14.72□□□□□ -0.05
UPF1-210ENST00000600689 FNDC10F2Z333 226 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 LYZP61626 148 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 ZNF714Q96N38 554 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 MUC6Q6W4X9 2439 aa14.72□□□□□ -0.05
UPF1-210ENST00000600689 CR1LQ2VPA4 569 aa14.71□□□□□ -0.05
UPF1-210ENST00000600689 SLC25A48Q6ZT89 311 aaKnown RBP14.71□□□□□ -0.05
UPF1-210ENST00000600689 ZADH2Q8N4Q0 377 aa14.71□□□□□ -0.05
UPF1-210ENST00000600689 SRSF12Q8WXF0 261 aaKnown RBP14.71□□□□□ -0.05
UPF1-210ENST00000600689 SCRT2Q9NQ03 307 aa14.71□□□□□ -0.05
UPF1-210ENST00000600689 CSMD1Q96PZ7 3565 aa14.71□□□□□ -0.05
UPF1-210ENST00000600689 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.71□□□□□ -0.06
UPF1-210ENST00000600689 PRSS3P2Q8NHM4 247 aa14.71□□□□□ -0.06
UPF1-210ENST00000600689 TACC2O95359 2948 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.7□□□□□ -0.06
UPF1-210ENST00000600689 CGB1A6NKQ9 187 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 OR5AL1P0C617 328 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 ARMS2P0C7Q2 107 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 POU2AF1Q16633 256 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 HLA-DRB1P01911 266 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 LIPFP07098 398 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 RBPMS2Q6ZRY4 209 aaKnown RBP14.7□□□□□ -0.06
UPF1-210ENST00000600689 BPIFA4PQ86YQ2 179 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 CACNG8Q8WXS5 425 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 AP1S3Q96PC3 154 aa14.7□□□□□ -0.06
UPF1-210ENST00000600689 FAM231BA6NCW3 169 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 GAGE10A6NGK3 116 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 CEACAM4O75871 244 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 PRSS57Q6UWY2 283 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 SMIM15Q7Z3B0 74 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 PERPQ96FX8 193 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 IGLV1-44P01699 117 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 RELNP78509 3460 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 A0A1W2PPI3 338 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 H3BUT2 72 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 TCRAP04437 139 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 LOXL1Q08397 574 aaPredicted RBP14.69□□□□□ -0.06
UPF1-210ENST00000600689 ATP5L2Q7Z4Y8 100 aa14.69□□□□□ -0.06
UPF1-210ENST00000600689 C1orf162Q8NEQ5 155 aaPredicted RBP14.69□□□□□ -0.06
UPF1-210ENST00000600689 RHOGP84095 191 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 NHLH1Q02575 133 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 C22orf34Q6ZV56 151 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 SLC25A15Q9Y619 301 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 S4R3C0 116 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 LHBP01229 141 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 PRSS33Q8NF86 280 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 FAM215AQ9Y5M1 114 aa14.68□□□□□ -0.06
UPF1-210ENST00000600689 F11RQ9Y624 299 aaKnown RBP14.68□□□□□ -0.06
UPF1-210ENST00000600689 IGHV1-46P01743 117 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 CNTFRP26992 372 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 CFHR2P36980 270 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 ZNF474Q6S9Z5 364 aaPredicted RBP14.67□□□□□ -0.06
UPF1-210ENST00000600689 FA2HQ7L5A8 372 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 CHCHD1Q96BP2 118 aaKnown RBP14.67□□□□□ -0.06
UPF1-210ENST00000600689 AP5S1Q9NUS5 200 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 ACACAQ13085 2346 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 SUB1P53999 127 aaKnown RBP eCLIP14.67□□□□□ -0.069e-7■■■□□ 17.7
UPF1-210ENST00000600689 C17orf77Q96MU5 243 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 RAB9BQ9NP90 201 aa14.67□□□□□ -0.06
UPF1-210ENST00000600689 FSTL3O95633 263 aa14.66□□□□□ -0.06
UPF1-210ENST00000600689 HIST1H1AQ02539 215 aaPredicted RBP14.66□□□□□ -0.06
UPF1-210ENST00000600689 OSR1Q8TAX0 266 aaPredicted RBP14.66□□□□□ -0.06
UPF1-210ENST00000600689 HSPB8Q9UJY1 196 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms