RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 IGHV3-35A0A0C4DH35 117 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 A0A0G2JLM5 398 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 ANKRD34BA5PLL1 514 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 TGOLN2O43493 480 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 TOMM40O96008 361 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 CLEC3BP05452 202 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 CTSGP08311 255 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 PSG1P11464 419 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 M6PRP20645 277 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 ADMP35318 185 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 INSL3P51460 131 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 RAB14P61106 215 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 CLLU1Q5K131 121 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 SSX7Q7RTT5 188 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 ZNF491Q8N8L2 437 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 OR10G4Q8NGN3 311 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 OR10G9Q8NGN4 311 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 OR10G7Q8NGN6 311 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 ZNF414Q96IQ9 312 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 ASCL2Q99929 193 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 SLC25A22Q9H936 323 aa9.68□□□□□ -0.86
UPF1-208ENST00000600012 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.67□□□□□ -0.86
UPF1-208ENST00000600012 A0A1B0GV50 99 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 NUPL2O15504 423 aaKnown RBP9.67□□□□□ -0.86
UPF1-208ENST00000600012 SCGB2A1O75556 95 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 MBP02144 154 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 RAB5CP51148 216 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 YPEL3P61236 119 aaPredicted RBP9.67□□□□□ -0.86
UPF1-208ENST00000600012 LYZP61626 148 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 ZNF726P1Q15940 193 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 SPATA31B1PQ5VZV4 182 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 ZNF343Q6P1L6 599 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 OR11H1Q8NG94 326 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 LRRC20Q8TCA0 184 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 MYOZ3Q8TDC0 251 aa9.67□□□□□ -0.86
UPF1-208ENST00000600012 GAR1Q9NY12 217 aaKnown RBP9.67□□□□□ -0.86
UPF1-208ENST00000600012 TEX46H3BTG2 121 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 HMGB3O15347 200 aaKnown RBP9.66□□□□□ -0.86
UPF1-208ENST00000600012 COX7A2P2O60397 106 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 IL4P05112 153 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 FABP1P07148 127 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 RD3LP0DJH9 198 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 ORM2P19652 201 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 ARL3P36405 182 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 PXDC1Q5TGL8 231 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 PATE2Q6UY27 113 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 DPPA3Q6W0C5 159 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 RPP25LQ8N5L8 163 aaKnown RBP9.66□□□□□ -0.86
UPF1-208ENST00000600012 OR51G1Q8NGK1 321 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 OR1B1Q8NGR6 318 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 UBE2E2Q96LR5 201 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 PBDC1Q9BVG4 233 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 SMAD5-AS1Q9Y6J3 95 aa9.66□□□□□ -0.86
UPF1-208ENST00000600012 IGHV3OR16-8A0A075B7F1 116 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 CTXND1A0A1B0GTU2 59 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 BMPR1BO00238 502 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 OR5G3P0C626 314 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 CDC34P49427 236 aaPredicted RBP9.65□□□□□ -0.86
UPF1-208ENST00000600012 FGF8P55075 233 aaPredicted RBP9.65□□□□□ -0.86
UPF1-208ENST00000600012 BLOC1S1P78537 153 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 FAM78BQ5VT40 261 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 SPSB3Q6PJ21 355 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 LCN15Q6UWW0 184 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 ZNF600Q6ZNG1 722 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 OR1L4Q8NGR5 311 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 MUC7Q8TAX7 377 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 Q8WTZ3 238 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 TMEM37Q8WXS4 190 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 RNF125Q96EQ8 232 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 SAT2Q96F10 170 aaPredicted RBP9.65□□□□□ -0.86
UPF1-208ENST00000600012 ATP6V0BQ99437 205 aa9.65□□□□□ -0.86
UPF1-208ENST00000600012 ACTR3CQ9C0K3 210 aaPredicted RBP9.65□□□□□ -0.86
UPF1-208ENST00000600012 SEPSECSQ9HD40 501 aaKnown RBP9.65□□□□□ -0.86
UPF1-208ENST00000600012 PEF1Q9UBV8 284 aaKnown RBP9.65□□□□□ -0.86
UPF1-208ENST00000600012 PUS1Q9Y606 427 aaKnown RBP eCLIP9.65□□□□□ -0.86
UPF1-208ENST00000600012 A0A1W2PPV4 95 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 MAP1LC3B2A6NCE7 125 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 I3L521 148 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 LGALS1P09382 135 aaKnown RBP9.64□□□□□ -0.87
UPF1-208ENST00000600012 H2AFB1P0C5Y9 115 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 RHOBP62745 196 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 USF2Q15853 346 aaPredicted RBP9.64□□□□□ -0.87
UPF1-208ENST00000600012 MORN5Q5VZ52 161 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 C10orf113Q5VZT2 155 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 TOMM20LQ6UXN7 152 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 MIR17HGQ75NE6 70 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 OR1N2Q8NGR9 330 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 RAB24Q969Q5 203 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 UHRF2Q96PU4 802 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 PFDN5Q99471 154 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 MAP1LC3BQ9GZQ8 125 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 HRH4Q9H3N8 390 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 ZFAND3Q9H8U3 227 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 FUT9Q9Y231 359 aa9.64□□□□□ -0.87
UPF1-208ENST00000600012 TRAV5A0A0B4J249 113 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 HYPMO75409 117 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 OR2C1O95371 312 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 PLP1P60201 277 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 RELQ04864 619 aaPredicted RBP9.63□□□□□ -0.87
UPF1-208ENST00000600012 CASC10Q5T4H9 136 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms