RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MGST1P10620 155 aaKnown RBP11.35□□□□□ -0.59
VRK3-217ENST00000599538 BRS3P32247 399 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 MEOX2P50222 304 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 CLEC2AQ6UVW9 174 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 TMEM219Q86XT9 240 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 STXBP6Q8NFX7 210 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 SPOCK3Q9BQ16 436 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 ZNF586Q9NXT0 402 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 RPH3ALQ9UNE2 315 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 GNG7O60262 68 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 GCGP01275 180 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 IL4P05112 153 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 USF2Q15853 346 aaPredicted RBP11.34□□□□□ -0.59
VRK3-217ENST00000599538 C17orf77Q96MU5 243 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 IMMP2LQ96T52 175 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 IL36BQ9NZH7 164 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 CDC42EP3Q9UKI2 254 aa11.34□□□□□ -0.59
VRK3-217ENST00000599538 USP9YO00507 2555 aaPredicted RBP11.34□□□□□ -0.59
VRK3-217ENST00000599538 A1L4Q6 167 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 GOSR1O95249 250 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 TOMM40O96008 361 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 SLC25A5P05141 298 aaKnown RBP11.33□□□□□ -0.6
VRK3-217ENST00000599538 IGHV4-38-2P0DP08 117 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 CDX1P47902 265 aaPredicted RBP11.33□□□□□ -0.6
VRK3-217ENST00000599538 RPL15P61313 204 aaKnown RBP11.33□□□□□ -0.6
VRK3-217ENST00000599538 ECSCRQ19T08 205 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 ACTL10Q5JWF8 245 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 RNF125Q96EQ8 232 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 GPR61Q9BZJ8 451 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 C1RLQ9NZP8 487 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 EPDR1Q9UM22 224 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.33□□□□□ -0.62e-6■■■■□ 21.2
VRK3-217ENST00000599538 OR2T8A6NH00 312 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 G3V318 75 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 MFAP4P55083 255 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 Q56UQ5 140 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 PIFOQ8TCI5 191 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 TMUB1Q9BVT8 246 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 Q9H3A6 140 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 C21orf62Q9NYP8 219 aa11.33□□□□□ -0.6
VRK3-217ENST00000599538 IGHV1-69DA0A0B4J2H0 117 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 PCP4L1A6NKN8 68 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 H3BRN7 92 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 IGHV1-69P01742 117 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 CNN1P51911 297 aaKnown RBP11.32□□□□□ -0.6
VRK3-217ENST00000599538 TAS2R60P59551 318 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 CSPG4Q6UVK1 2322 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 UNQ5815/PRO19632Q6UWF5 114 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 HIST3H2BBQ8N257 126 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 EXOC3-AS1Q8N2X6 119 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 FBXL7Q9UJT9 491 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 ANKRD17O75179 2603 aaKnown RBP11.32□□□□□ -0.6
VRK3-217ENST00000599538 IGHV3-35A0A0C4DH35 117 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 WI2-2373I1.2A0A1W2PRP0 233 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 NDUFS8O00217 210 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 CA1P00915 261 aaPredicted RBP11.32□□□□□ -0.6
VRK3-217ENST00000599538 Q71RC1 249 aaPredicted RBP11.32□□□□□ -0.6
VRK3-217ENST00000599538 BAGE2Q86Y30 109 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 SHANK2-AS3Q9BTD1 123 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 CHRDL1Q9BU40 450 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 PTPN13Q12923 2485 aa11.32□□□□□ -0.6
VRK3-217ENST00000599538 ZANQ9Y493 2812 aa11.31□□□□□ -0.6
VRK3-217ENST00000599538 SPINK4O60575 86 aa11.31□□□□□ -0.6
VRK3-217ENST00000599538 HIST1H1BP16401 226 aaKnown RBP11.31□□□□□ -0.6
VRK3-217ENST00000599538 FCGR2BP31994 310 aaPredicted RBP11.31□□□□□ -0.6
VRK3-217ENST00000599538 OR8I2Q8N0Y5 310 aa11.31□□□□□ -0.6
VRK3-217ENST00000599538 C5orf56Q8N8D9 126 aa11.31□□□□□ -0.6
VRK3-217ENST00000599538 IGHV3OR16-8A0A075B7F1 116 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 AMY1AP04745 511 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 S100A8P05109 93 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 CTSGP08311 255 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 TCL1AP56279 114 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 YPEL3P61236 119 aaPredicted RBP11.3□□□□□ -0.6
VRK3-217ENST00000599538 SLC35B1P78383 322 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 IBA57Q5T440 356 aaKnown RBP11.3□□□□□ -0.6
VRK3-217ENST00000599538 ZNF414Q96IQ9 312 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 OSTCQ9NRP0 149 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 TMEM14CQ9P0S9 112 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 AVPP01185 164 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 HIST1H1EP10412 219 aaKnown RBP11.3□□□□□ -0.6
VRK3-217ENST00000599538 ADMP35318 185 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 TMEM183BQ1AE95 376 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 RPEL1Q2QD12 228 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 ZNF48Q96MX3 618 aaPredicted RBP11.3□□□□□ -0.6
VRK3-217ENST00000599538 LINC00527Q9UJ94 153 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 TRAPPC1Q9Y5R8 145 aa11.3□□□□□ -0.6
VRK3-217ENST00000599538 TRAV8-1A0A0A6YYK1 113 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 MRPS12O15235 138 aaKnown RBP11.29□□□□□ -0.6
VRK3-217ENST00000599538 FABP1P07148 127 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 MSMBP08118 114 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 CBLN1P23435 193 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 C15orf32Q32M92 178 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 PRR27Q6MZM9 219 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 FAM110DQ8TAY7 271 aaPredicted RBP11.29□□□□□ -0.6
VRK3-217ENST00000599538 C7orf69Q9H7B7 122 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 SERTAD4Q9NUC0 356 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 THYN1Q9P016 225 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 ABCA12Q86UK0 2595 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 TRAV30A0A087WSZ9 112 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 TCRAP04437 139 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms