RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 C4orf46Q504U0 113 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 GGNBP1Q5YKI7 109 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 LRTM2Q8N967 370 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 OR1S2Q8NGQ3 325 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 TMEM170AQ8WVE7 144 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 RAB40CQ96S21 281 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 C7orf50Q9BRJ6 194 aaKnown RBP7.85□□□□□ -1.15
VPS4B-202ENST00000588059 C1QTNF4Q9BXJ3 329 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 TMED3Q9Y3Q3 217 aa7.85□□□□□ -1.15
VPS4B-202ENST00000588059 PITX3O75364 302 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 MED6O75586 246 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 IGKV1-17P01599 117 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 IGLC1P0CG04 106 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 ANXA7P20073 488 aaKnown RBP7.84□□□□□ -1.15
VPS4B-202ENST00000588059 CRYBB3P26998 211 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 EMP1P54849 157 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 PSMG4Q5JS54 123 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 ZNF705AQ6ZN79 300 aaPredicted RBP7.84□□□□□ -1.15
VPS4B-202ENST00000588059 COQ8AQ8NI60 647 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 Q8WTZ3 238 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 NPIPB3Q92617 1050 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 NARS2Q96I59 477 aaKnown RBP7.84□□□□□ -1.15
VPS4B-202ENST00000588059 METTL26Q96S19 204 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 NEU1Q99519 415 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 MAGT1Q9H0U3 335 aa7.84□□□□□ -1.15
VPS4B-202ENST00000588059 ZNF705FA8MVS1 300 aaPredicted RBP7.83□□□□□ -1.16
VPS4B-202ENST00000588059 WRBO00258 174 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 ADAP1O75689 374 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 OR4E1P0C645 316 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 ZNF705DP0CH99 300 aaPredicted RBP7.83□□□□□ -1.16
VPS4B-202ENST00000588059 ZNF705BP0CI00 300 aaPredicted RBP7.83□□□□□ -1.16
VPS4B-202ENST00000588059 SLC25A6P12236 298 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 BTCP35070 178 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 NUTF2P61970 127 aaKnown RBP7.83□□□□□ -1.16
VPS4B-202ENST00000588059 RAB11AP62491 216 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 SLC35E1Q96K37 410 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 DKK2Q9UBU2 259 aa7.83□□□□□ -1.16
VPS4B-202ENST00000588059 DMBT1Q9UGM3 2413 aaPredicted RBP7.82□□□□□ -1.16
VPS4B-202ENST00000588059 TMEM189A5PLL7 270 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 HELTA6NFD8 242 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 ZFP92A6NM28 416 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 FAM90A26D6RGX4 464 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 H3BMM0 161 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 PLA2G10O15496 165 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 LYRM1O43325 122 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 SYNGR2O43760 224 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 RD3LP0DJH9 198 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 HTN3P15516 51 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 ATP5IP56385 69 aaPredicted RBP7.82□□□□□ -1.16
VPS4B-202ENST00000588059 YPEL3P61236 119 aaPredicted RBP7.82□□□□□ -1.16
VPS4B-202ENST00000588059 RPP30P78346 268 aaKnown RBP7.82□□□□□ -1.16
VPS4B-202ENST00000588059 DHRS2Q13268 280 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 CNPY1Q3B7I2 92 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 FAM222AQ5U5X8 452 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 CIB3Q96Q77 187 aaPredicted RBP7.82□□□□□ -1.16
VPS4B-202ENST00000588059 NIPSNAP3BQ9BS92 247 aa7.82□□□□□ -1.16
VPS4B-202ENST00000588059 TEX48A0A1B0GUV7 120 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 SMIM9A6NGZ8 99 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 IL4P05112 153 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 HNRNPCP07910 306 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS4B-202ENST00000588059 GPX4P36969 197 aaPredicted RBP7.81□□□□□ -1.16
VPS4B-202ENST00000588059 FAM3BP58499 235 aaPredicted RBP7.81□□□□□ -1.16
VPS4B-202ENST00000588059 SPANXN5Q5MJ07 72 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 TMEM88Q6PEY1 159 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 C6orf223Q8N319 242 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 GLMPQ8WWB7 406 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 CCDC32Q9BV29 185 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 C20orf85Q9H1P6 137 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 U3KQE9 123 aa7.81□□□□□ -1.16
VPS4B-202ENST00000588059 TRAV6A0A075B6T7 132 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 NBDYA0A0U1RRE5 68 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 H3BP45 60 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 SCGB1D2O95969 90 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 TOMM40O96008 361 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 TCRBP04435 133 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 PSG1P11464 419 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 HLA-DRB4P13762 266 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 EIF2B2P49770 351 aaKnown RBP7.8□□□□□ -1.16
VPS4B-202ENST00000588059 POLR2GP62487 172 aaKnown RBP eCLIP7.8□□□□□ -1.16
VPS4B-202ENST00000588059 GAMTQ14353 236 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 OXA1LQ15070 435 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 USF2Q15853 346 aaPredicted RBP7.8□□□□□ -1.16
VPS4B-202ENST00000588059 S100ZQ8WXG8 99 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 PBDC1Q9BVG4 233 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 RFNGQ9Y644 331 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 HLA-DRB4X5D2U9 266 aa7.8□□□□□ -1.16
VPS4B-202ENST00000588059 IGHV3OR16-12A0A075B7B8 117 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 A6NHS1 94 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 SSSCA1O60232 199 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 FABP1P07148 127 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 NKX2-1P43699 371 aaPredicted RBP7.79□□□□□ -1.16
VPS4B-202ENST00000588059 SNRPD3P62318 126 aaKnown RBP7.79□□□□□ -1.16
VPS4B-202ENST00000588059 ZNF90Q03938 601 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 OR2F1Q13607 317 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 IAH1Q2TAA2 248 aaPredicted RBP7.79□□□□□ -1.16
VPS4B-202ENST00000588059 C16orf54Q6UWD8 224 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 SPATA12Q7Z6I5 190 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 OR51G1Q8NGK1 321 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 ZNRF2Q8NHG8 242 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 SEPSECSQ9HD40 501 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms