RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 FAM90A2PQ658T7 463 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 CLEC19AQ6UXS0 136 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 ZNF491Q8N8L2 437 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 CCDC140Q96MF4 163 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 DUX5Q96PT3 197 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 PAXXQ9BUH6 204 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 PRSS22Q9GZN4 317 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 OR51M1Q9H341 326 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 ZNF702PQ9H963 129 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 MRPL27Q9P0M9 148 aaKnown RBP8.17□□□□□ -1.1
SS18-217ENST00000580958 ZNF580Q9UK33 172 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 TRBV7-1A0A0A6YYK4 115 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 NUPL2O15504 423 aaKnown RBP8.16□□□□□ -1.1
SS18-217ENST00000580958 TGOLN2O43493 480 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 NDUFS6O75380 124 aaKnown RBP8.16□□□□□ -1.1
SS18-217ENST00000580958 SNAPINO95295 136 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 BRI3O95415 125 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 IGLV1-40P01703 118 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 CLEC3BP05452 202 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 HNF1AP20823 631 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 NOTCH2Q04721 2471 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 LEMD1Q68G75 181 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 ZNF600Q6ZNG1 722 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 TMEM86BQ8N661 226 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 CLRN3Q8NCR9 226 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 SUN5Q8TC36 379 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 ZNF414Q96IQ9 312 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 SLC25A39Q9BZJ4 359 aaPredicted RBP8.16□□□□□ -1.1
SS18-217ENST00000580958 NKX6-2Q9C056 277 aaPredicted RBP8.16□□□□□ -1.1
SS18-217ENST00000580958 NPFFR1Q9GZQ6 430 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 KLK15Q9H2R5 256 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 GNB4Q9HAV0 340 aa8.16□□□□□ -1.1
SS18-217ENST00000580958 GAR1Q9NY12 217 aaKnown RBP8.16□□□□□ -1.1
SS18-217ENST00000580958 PUS1Q9Y606 427 aaKnown RBP eCLIP8.16□□□□□ -1.1
SS18-217ENST00000580958 IGHV3-35A0A0C4DH35 117 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 PPP5D1E7EU14 171 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 F6UZH7 168 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 TMEM250H0YL14 139 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 H3BRN7 92 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 M0R036 132 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 OR2C1O95371 312 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 USF2Q15853 346 aaPredicted RBP8.15□□□□□ -1.1
SS18-217ENST00000580958 LCNL1Q6ZST4 164 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 RPUSD4Q96CM3 377 aaKnown RBP8.15□□□□□ -1.1
SS18-217ENST00000580958 FXYD5Q96DB9 178 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 SMR3AQ99954 134 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 TXNDC17Q9BRA2 123 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 SHANK2-AS3Q9BTD1 123 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 C20orf24Q9BUV8 137 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 ARL2-SNX15V9GYD0 113 aa8.15□□□□□ -1.1
SS18-217ENST00000580958 DNAJC9-AS1A6NH13 148 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 ZNF727A8MUV8 499 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 H3BQ15 152 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 PDE6DO43924 150 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 IGHV3-11P01762 117 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 SNRPCP09234 159 aaKnown RBP8.14□□□□□ -1.11
SS18-217ENST00000580958 GP9P14770 177 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 NPPCP23582 126 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 ZNF674Q2M3X9 581 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 AWAT1Q58HT5 328 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 C10orf99Q6UWK7 81 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 TOMM20LQ6UXN7 152 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 ZNF329Q86UD4 541 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 STXBP6Q8NFX7 210 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 USMG5Q96IX5 58 aa8.14□□□□□ -1.11
SS18-217ENST00000580958 IGHV3OR16-8A0A075B7F1 116 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.13□□□□□ -1.11
SS18-217ENST00000580958 SCO2A0A1W2PP80 73 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 A0A1W2PRE2 83 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 ZNF98A6NK75 572 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 H3BTX0 84 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 LY6G6DO95868 133 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 TRBV12-3P01733 135 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 IGHG4P01861 327 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 ARL3P36405 182 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 RAB9AP51151 201 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 BTN1A1Q13410 526 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 BLNKQ8WV28 456 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 TVP23CQ96ET8 276 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 ATP6V0BQ99437 205 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 SMIM7Q9BQ49 75 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 NIPSNAP3BQ9BS92 247 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 PARLQ9H300 379 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 TMEM14CQ9P0S9 112 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 RABAC1Q9UI14 185 aa8.13□□□□□ -1.11
SS18-217ENST00000580958 MTORP42345 2549 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 A0A0G2JLM5 398 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 TMEM89A2RUT3 159 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 C7orf77A4D0Y5 90 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 GGTLC3B5MD39 225 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 DNASE2O00115 360 aaPredicted RBP8.12□□□□□ -1.11
SS18-217ENST00000580958 NDUFB4O95168 129 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 RELQ04864 619 aaPredicted RBP8.12□□□□□ -1.11
SS18-217ENST00000580958 FAM74A3Q4VXF1 159 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 S100A7AQ86SG5 101 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 OR4X2Q8NGF9 303 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 C11orf52Q96A22 123 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 ESM1Q9NQ30 184 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 TMEM160Q9NX00 188 aa8.12□□□□□ -1.11
SS18-217ENST00000580958 NAT8Q9UHE5 227 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms