RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 LINC00305Q7Z4B0 112 aa11.75□□□□□ -0.53
SS18-206ENST00000577572 SFT2D1Q8WV19 159 aa11.75□□□□□ -0.53
SS18-206ENST00000577572 TMEM190Q8WZ59 177 aa11.75□□□□□ -0.53
SS18-206ENST00000577572 METTL26Q96S19 204 aa11.75□□□□□ -0.53
SS18-206ENST00000577572 SHANK2-AS3Q9BTD1 123 aa11.75□□□□□ -0.53
SS18-206ENST00000577572 MAP1LC3BQ9GZQ8 125 aa11.75□□□□□ -0.53
SS18-206ENST00000577572 ANKRD34BA5PLL1 514 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 LINC00862A6NCI5 91 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 PSMB3P49720 205 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 USF2Q15853 346 aaPredicted RBP11.74□□□□□ -0.53
SS18-206ENST00000577572 RPEL1Q2QD12 228 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 REC114Q7Z4M0 266 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 NARS2Q96I59 477 aaKnown RBP11.74□□□□□ -0.53
SS18-206ENST00000577572 ZNF414Q96IQ9 312 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 PBDC1Q9BVG4 233 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 SLC25A39Q9BZJ4 359 aaPredicted RBP11.74□□□□□ -0.53
SS18-206ENST00000577572 UFC1Q9Y3C8 167 aa11.74□□□□□ -0.53
SS18-206ENST00000577572 LINC01619G3V211 115 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 H3BRN7 92 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 HAX1O00165 279 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 TRBV12-3P01733 135 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 CD28P10747 220 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 NPPCP23582 126 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 CRYBB3P26998 211 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 BMI1P35226 326 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 NDUFA11Q86Y39 141 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.73□□□□□ -0.53
SS18-206ENST00000577572 DPF1Q92782 380 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 GPR82Q96P67 336 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 SLC25A22Q9H936 323 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 TMEM167BQ9NRX6 74 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 TMEM14CQ9P0S9 112 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 DOK5Q9P104 306 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 U3KQE9 123 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 ARL2-SNX15V9GYD0 113 aa11.73□□□□□ -0.53
SS18-206ENST00000577572 C2CD3Q4AC94 2353 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 A0A1W2PS18 150 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 A8MWP6 167 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 NDUFS6O75380 124 aaKnown RBP11.72□□□□□ -0.53
SS18-206ENST00000577572 LCN15Q6UWW0 184 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 MIR17HGQ75NE6 70 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 C1QL4Q86Z23 238 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 KLHL30-AS1Q8NEE0 82 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 OR1N2Q8NGR9 330 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 SUN5Q8TC36 379 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 HRH4Q9H3N8 390 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 SMDT1Q9H4I9 107 aa11.72□□□□□ -0.53
SS18-206ENST00000577572 DAZ1Q9NQZ3 744 aaKnown RBP11.72□□□□□ -0.53
SS18-206ENST00000577572 RAB19A4D1S5 217 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 ZNF98A6NK75 572 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 IFNA1P01562 189 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 MEOX2P50222 304 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 FHL3Q13643 280 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 KLF5Q13887 457 aaPredicted RBP11.71□□□□□ -0.53
SS18-206ENST00000577572 KHDC1LQ5JSQ8 128 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 BPIFA4PQ86YQ2 179 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 EIF4E3Q8N5X7 224 aaKnown RBP11.71□□□□□ -0.53
SS18-206ENST00000577572 MARC2Q969Z3 335 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 FAM167A-AS1Q96KT0 104 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 OR5B12Q96R08 314 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 CITED2Q99967 270 aaPredicted RBP11.71□□□□□ -0.53
SS18-206ENST00000577572 TMEM231Q9H6L2 316 aa11.71□□□□□ -0.53
SS18-206ENST00000577572 NF1P21359 2839 aa11.71□□□□□ -0.54
SS18-206ENST00000577572 IGHV4OR15-8A0A075B7B6 117 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 A0A087WW49 117 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 BUB3O43684 328 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 RPL7P18124 248 aaKnown RBP11.7□□□□□ -0.54
SS18-206ENST00000577572 HOXD3P31249 432 aaPredicted RBP11.7□□□□□ -0.54
SS18-206ENST00000577572 OR11H1Q8NG94 326 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 GRAMD2BQ96HH9 432 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 UHRF2Q96PU4 802 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 TXNDC17Q9BRA2 123 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 SLC25A2Q9BXI2 301 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 OR51M1Q9H341 326 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 MANBALQ9NQG1 85 aa11.7□□□□□ -0.54
SS18-206ENST00000577572 CD5P06127 495 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 ARL14EPLP0DKL9 152 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 GCHFRP30047 84 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 GUK1Q16774 197 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 AWAT1Q58HT5 328 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 SPATA31B1PQ5VZV4 182 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 SSX7Q7RTT5 188 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 PAXXQ9BUH6 204 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 C20orf24Q9BUV8 137 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 ELOVL1Q9BW60 279 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 NKX6-2Q9C056 277 aaPredicted RBP11.69□□□□□ -0.54
SS18-206ENST00000577572 PEMTQ9UBM1 199 aa11.69□□□□□ -0.54
SS18-206ENST00000577572 IGHV3-35A0A0C4DH35 117 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 ZNF320A2RRD8 509 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 CCL24O00175 119 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 OR7C2O60412 319 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 HIST1H1EP10412 219 aaKnown RBP11.68□□□□□ -0.54
SS18-206ENST00000577572 MYCNOSP40205 109 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 SRSF2Q01130 221 aaKnown RBP11.68□□□□□ -0.54
SS18-206ENST00000577572 UQCC3Q6UW78 93 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 UNQ9165/PRO28630Q6UXU0 137 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 OR4F17Q8NGA8 305 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 FAM210AQ96ND0 272 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 OR4F4Q96R69 305 aa11.68□□□□□ -0.54
SS18-206ENST00000577572 SCRT1Q9BWW7 348 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms